| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5332 |
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| Symbol | |
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| ID | 8361509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6812021 |
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| End bp | 6813064 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644967480 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_003124964 |
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| Protein GI | 256424311 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.588118 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAGG AAAAAACGCA GCCATCTAAA GGCCCGGTAA AGTTTATCGT ATTGGGCGTA
GCCGGAATAG CAATTCTTTA TTTCGGAGGA AAGAAGATAA TGCACGCCTA TACACATGAA
AGCACTGATA ATGCACAGAT TGAGAGCAAT GCGATTCCTG TGGTGAGCAG GGTCGGCGGC
TACATCGATA CATTTGCATT ACAGGATTAT CAGTCTGTAA AAGGAGGTCA GTTATTGCTG
ACCATTGATG ATAAGGAATA CAAAATTGCC GTACAACAGG CAGAAGCAGA TCTCTCCGCC
GCAAAAGCAG ATCTGATATT TGCAGAAGCA CAGATCACCA ATATCGGCTC GGATAAAAAT
GTAGCGGATG CAGGTGTCAG TGTAGAACAG GTTAACCTGG AAAAAGCAAC CCGCGACCTC
GCCAGAGATC AGGCCCTGTT TAACGATGGT TCTATCACAC AGCACCAGCT GGATAATAGT
CAGTCTGCCT ACAAAGTGGC ATTGAGTCAG TTGGAATCTT CCAGGAAACG CGTGAGCCAG
GTAGTCACAC AGCATGGTAC CGCCAATGCA CAGATCGAAA AAGCAAAGGC GAATGTAGCC
CTGAAAGAAG CTGCACTGGA ATCAGCTAAG CTGAAATTAT CTTATACACA GGTGATAGCG
CCGGTAGCCG GTAGAATCGG GAAAACCAAT CTGCAGAAAG GACAACTGGT ACAGGCGGGT
CAACAGCTGT TCAGCGTCGT GAACAATGAA CGCTACTGGA TCGTTGCCAA CTTCAAGGAA
ACCCAGTTGG AGAAGATGAA AATAGGACAG GTTGTGAAAG TGGAAGTAGA CGGTTATCCT
GACAAGGAGA TCTCCGGTAA AATCGTCGCT TTCAGTGATG CCACCGGCGC TAAATTTTCG
CTCCTGCCAC CGGATAATGC TACGGGTAAC TTTGTAAAGG TGACACAGCG TGTGCCTGTT
AAAATTGAAA TTGACCGCGC AGAAGAACTG AAAAGTATAC TGAAAGCAGG TCTTAGCGTA
ACTGTAGATG TACAGGTTGA TTAA
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| Protein sequence | MTQEKTQPSK GPVKFIVLGV AGIAILYFGG KKIMHAYTHE STDNAQIESN AIPVVSRVGG
YIDTFALQDY QSVKGGQLLL TIDDKEYKIA VQQAEADLSA AKADLIFAEA QITNIGSDKN
VADAGVSVEQ VNLEKATRDL ARDQALFNDG SITQHQLDNS QSAYKVALSQ LESSRKRVSQ
VVTQHGTANA QIEKAKANVA LKEAALESAK LKLSYTQVIA PVAGRIGKTN LQKGQLVQAG
QQLFSVVNNE RYWIVANFKE TQLEKMKIGQ VVKVEVDGYP DKEISGKIVA FSDATGAKFS
LLPPDNATGN FVKVTQRVPV KIEIDRAEEL KSILKAGLSV TVDVQVD
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