Gene Cpin_5087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5087 
Symbol 
ID8361263 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6332436 
End bp6334760 
Gene Length2325 bp 
Protein Length774 aa 
Translation table11 
GC content46% 
IMG OID644967235 
Productmaltose phosphorylase 
Protein accessionYP_003124720 
Protein GI256424067 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1554] Trehalose and maltose hydrolases (possible phosphorylases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.076109 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.646973 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAAT ACATAAAAGT AGACGGGTGG AACATCATCG AAGAAGGTTT TGTACCACAT 
TACAATAAAA TATCTGAAAG CATATTCAGT CTGGGAAATG GTCGTATGGG CCAGCGCGCC
AACTTTGAAG AAACCTATTC CGGCGAAACC TTACAGGGCA ATTATGTGGC CGGTGTCTAT
TATCCCGATA AGACCCGGGT AGGTTGGTGG AAGAATGGTT ACCCGGAGTA TTTTGCCAAA
GTATTGAACG CGGCCAACTG GATAGGTATC GGCATCCGTA TTGAGGAGGA AGAACTGGAT
CTGCATAAAG CCCGGGTAAC TGATTTCAGT CGTGTACTGA ACATGCAGGA AGGGTACCTG
CAACGTTCCT TTACAGCAAC GCTGGAAAGC GGCAAACAGG TAAAAGTAAC TGCTACGCGT
TTCTGTAGTA TTGTGGATGA TGAAACGGGT GCGATCCGGT ATAGTATCAC CCCCCTGAAC
TTTGAGGGTA ATGTGCAGGT AACAGCCTAT ATCGATGGCG ATATCAAAAA CCAGGATGCT
AACTATGATG AGAAATTCTG GGAAGAAACA GGCGCCAGTA TCCAGCATAC AAGTGCGTAT
ATCACACTGA AGACAAAAAA AACCGGTTTC CAGGTATGTA CCGGTATGCA GTTCAATATA
TACCAGGATG CGAAGCCGGT AGTAATGCAC GTAACGCCGG TACAGAAAGA AAAGTACGTA
GGTGTGGTGA CGACCGTGAA GGTGAAAAGT CAGCAGGAGA CAGTTATTTA CAAATACGCC
GCAAATCTTT CTTCTGAAAA TCATGCAGTA GCCGCATTAG CCAATAATTG TGAAATCTCG
GTTGGTAAAG CAGCGGCAAA AGGCTTTGAT GCCATGCTGA AAGAACAGGC GGCTGCCTGG
GCGATGAAAT GGAAAGAAAG CGATATCATC ATTGAAGGCG ATCCGGCTGC ACAGCAGGGC
ATCCGTTTTA ATATCTTCCA GCTGAACCAG ACTTACACAG GTGAAGACGC CCGTCTGAAT
ATCGGACCGA AAGGTTTTAC CGGTGAAAAA TATGGCGGTT CAACTTACTG GGATACGGAA
GCCTATTGCA TACCGTTTTA TCTCGCAACT GCGGACCCAC AGGTGGCCCG TAATCTGCTG
ATCTATCGTT ATAAGCAGTT GGGCAAAGCC ATCGAAAATG CGGCCAAATT AGGCTTTAAT
AACGGCGCAG CACTATATCC GATGGTGACC ATGAACGGAG AAGAGTGTCA CAACGAATGG
GAGATCACTT TTGAAGAAAT TCACCGTAAC GCAGCGATCG CTTTTGCTAT TTTCAATTAC
ATTCGTTATA CCGGCGATAC AGCTTATCTG GCGGAATATG GTACGGAAGT ACTGATCGGT
ATAGCCCGCT TCTGGGCACA GCGTGTTAAC TGGAGCGAAG CACGCGGCCA GTACGTAATG
CTGGGGGTGA CCGGACCGAA TGAATACGAG AACAATGTCA ATAATAACTG GTATACCAGC
ACCATGGCAA CCTGGTGTCT GCAGTACGCA ACAGAAGCAT TACAGTACGT AAAAGAGACG
GCTGCTAACA GATATGACGC TATTATTAAA ACGACCTTTT TTGACGCCGG TAAAGAACTG
GAAAAATGGC AGCATGTGAT TGATAATATG TATTATCCGG TTGATGAACA GTTGGGCGTG
TTCCTGCAAC AGGATGGTTA TCTTGACAAA GAGCAGATCC TGGTAAAAGA CCTGGATCCT
GCACAGCGTC CGCTGAATCA GAAATGGAGC TGGGATCGTA TTCTGCGTTC CTGCTTTATA
AAACAGGCAG ACGTTTTGCA GGGATTATAT TTCCTGGAAG ACAGGTACGA TATCGATACA
CTGCGTCGTA ACTTTGATTT CTACGAACCG CGCACTGTTC ACGAAAGCTC CCTGTCTCCC
TGTGTACATG CGATTCTGGC TGCGAAACTG GGTGACGAAA AAAGAGCGCA TGAGTTCTAT
CTGCGCACTT CCCGTCTGGA CCTGGACGAT TATAACAACG ATACAGAAGA TGGGCTGCAT
ATTACTTCCA TGGCAGGTAC CTGGATGAGT GTGGTAGAAG GTTTTGCCGG TATGCGTGTA
AGAGATGGAC AGTTGCAGTT CACACCATTC CTGCCAGGTA AGTGGCAATC ATTTGCGTTC
AGCATCCGTT TCCGCGGAAG AATACTGAAG GTGAAAGTGA GCAAACAGGA TGTGACCATT
GAAAATGATG CTGTGAATGA CATCACCGTG TACATCTACG GAGAAGCGGT GGAAGTACCA
GCTGGTGCAA CAGTAACGGC TAAGCAAGGA AATTTAGTTA ATTAA
 
Protein sequence
MKQYIKVDGW NIIEEGFVPH YNKISESIFS LGNGRMGQRA NFEETYSGET LQGNYVAGVY 
YPDKTRVGWW KNGYPEYFAK VLNAANWIGI GIRIEEEELD LHKARVTDFS RVLNMQEGYL
QRSFTATLES GKQVKVTATR FCSIVDDETG AIRYSITPLN FEGNVQVTAY IDGDIKNQDA
NYDEKFWEET GASIQHTSAY ITLKTKKTGF QVCTGMQFNI YQDAKPVVMH VTPVQKEKYV
GVVTTVKVKS QQETVIYKYA ANLSSENHAV AALANNCEIS VGKAAAKGFD AMLKEQAAAW
AMKWKESDII IEGDPAAQQG IRFNIFQLNQ TYTGEDARLN IGPKGFTGEK YGGSTYWDTE
AYCIPFYLAT ADPQVARNLL IYRYKQLGKA IENAAKLGFN NGAALYPMVT MNGEECHNEW
EITFEEIHRN AAIAFAIFNY IRYTGDTAYL AEYGTEVLIG IARFWAQRVN WSEARGQYVM
LGVTGPNEYE NNVNNNWYTS TMATWCLQYA TEALQYVKET AANRYDAIIK TTFFDAGKEL
EKWQHVIDNM YYPVDEQLGV FLQQDGYLDK EQILVKDLDP AQRPLNQKWS WDRILRSCFI
KQADVLQGLY FLEDRYDIDT LRRNFDFYEP RTVHESSLSP CVHAILAAKL GDEKRAHEFY
LRTSRLDLDD YNNDTEDGLH ITSMAGTWMS VVEGFAGMRV RDGQLQFTPF LPGKWQSFAF
SIRFRGRILK VKVSKQDVTI ENDAVNDITV YIYGEAVEVP AGATVTAKQG NLVN