Gene Cpin_5000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5000 
Symbol 
ID8361176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6251985 
End bp6252686 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content48% 
IMG OID644967149 
ProductDSBA oxidoreductase 
Protein accessionYP_003124634 
Protein GI256423981 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2761] Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.324442 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0420894 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTAG AGATCTGGTC AGATATCATG TGTCCCTGGT GCTACATCGG CAAACGCCGG 
TTTGAAGCCG CTATGGAACA ATTTCCTGAC GCCGGATCTG TAGAAATAGA ATGGCACAGT
TTCCAGCTGG ATCCTACCAT CGAGTCAGGA CACGGCGACA ACCTGTATAC CTACCTGTCC
AAAAGAAAGG GCATCCCTTA CGAACAGGCA GAACAGATGA ATAACCAGGT AACAGGATTA
GCAGCGACCC TCGGACTGAC TTACAATATG GAACAGGCGG TTGTAGCCAA CTCCTTTGAC
GCCCACAGGC TGATACAGCT GGCTAAAAAA CACCAGTTGG GCGATGCTGC CGAAGAAAGA
TTATTTAAGG CTTATTTCAC CGAAGGAAAG GATTTCAGTA ATCCGGATAC CCTGGTGGCC
CTGGGTAAGG AAATCGGTCT GGAAGAAAGC GTATTAAAAA ACCTGGTTGG TAGTCAGTCA
TTTACAACGG AAGTACGTCG TGATATCGAT GAAGCAGAAA CACTGGGTAT CAGAGGCGTT
CCTTTCTTCG TTTTTGACAG GAAATATGGT GTTTCCGGCG CACAGGCCTC CGAAACCTTC
CTGGAAGTGC TGACGAAATC TGTAGGTGAA TGGAAAAGTA CGCAGCCTTC AGATCTGGAG
ATCATAGAAG GTCAAACCTG CGGACCAGAC GGAGATTGCT AG
 
Protein sequence
MKVEIWSDIM CPWCYIGKRR FEAAMEQFPD AGSVEIEWHS FQLDPTIESG HGDNLYTYLS 
KRKGIPYEQA EQMNNQVTGL AATLGLTYNM EQAVVANSFD AHRLIQLAKK HQLGDAAEER
LFKAYFTEGK DFSNPDTLVA LGKEIGLEES VLKNLVGSQS FTTEVRRDID EAETLGIRGV
PFFVFDRKYG VSGAQASETF LEVLTKSVGE WKSTQPSDLE IIEGQTCGPD GDC