| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4885 |
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| Symbol | |
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| ID | 8361061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6110780 |
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| End bp | 6112024 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644967035 |
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| Product | nuclease SbcCD, D subunit |
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| Protein accession | YP_003124520 |
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| Protein GI | 256423867 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0420] DNA repair exonuclease |
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| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.158027 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.788581 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAT TGCATACTGC GGACTGGCAT ATCGGACAAA CCTTTTATCA GTATGACAGG
ACGTATGAGC ATCAGCAGTT TTTACACTGG CTGGTGGATA CCATTAAAGC ACACGATGTA
GAACTGCTGA TCATCAGCGG AGATGTGTTT GATATCGCCA ACCCTTCCGC TGTTGCCATC
AAATTGTTTT ACGCATTTCT CAATAGTGCC GTAAAGGCAC AACCAGGATT ACAGATCATC
GTGACGGCTG GTAATCATGA CTCTGCCGCC CGACTGGAAG CGCCGAAGCC TTTACTGGAA
TCTTCGGACA TCCATATCGT CGGACTGATA GAACGGAAGG AAGATGGCAG TATCAATTAT
GAGAAAATGC TGATCCCTGT GAGAGACAGG AATGGCGAAA CAGTGCTGTG GTGTATGGCG
ATCCCGTTTC TGCGTATGGG CGATTATCCG GCGGTAGCCG AAAGCGAAAC CCTGTATGCG
GATGGTGTAA GCGCACTGTA TAAAGAAGCC TATGAACATG CACTGACAAA AAAACAAGGA
GGACAGGGCA TCATCGCAAT GGCACACCTG CATACATTGG ATGCTGAGCT GTCTGATCAC
GATAAATCTG AGAGAGTGAT CATGGGAGGT ATTGAATTCG TTCCTGCGAA AGCGTTTCAC
GAAGAGCTGC TGTATGTAGC CTTGGGACAT ATTCATAAAG CCCAGAAAAT AGGTGGAAAA
GAACATATCC GCTACAGCGG TAGTCCGCTG CCAATGTCAT TCTCTGAAAT GAACTACAAA
CACCAGGTGG TGAGCTTTGA TATCAGTAAT GGCGTCATGA GCGGACTGGA AATGCTGGAA
ATACCGGTAA CGACTGAACT ACTGCGGGTA CCTGCCAAAC CGCAGCCCAT CGAAGCGGTG
CTGGAAGCCT TATTACAATT GCCGGAAGCG ACGGAAACAA TACATACCGC TCCTTACCTG
GAAGTACGTG TACTGCTGGA AGGACCTGAA CCTGCCCTGC GGCACAAGAT AGAAACAGCC
CTTGCCGGCA AACATGTGCG ACTGGCAAAA ATAGACGTCC GCTACCCCTC CTCCGCAGCC
GAAGGAACAG GAGAGAGGAT CGCCAGCGCT GCACAATTGC AGGAATTAAG TCCGCTGGAT
ATCTTTAAAA AGATTTACCA GGAAGACTAT GAGCGCGAAA CGCCGGAGGA ACTGGTGGCC
CTGTTTCAGC AGGTATTGCA GGAGATTAAC ACAAAAGAAG AGTAA
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| Protein sequence | MKILHTADWH IGQTFYQYDR TYEHQQFLHW LVDTIKAHDV ELLIISGDVF DIANPSAVAI
KLFYAFLNSA VKAQPGLQII VTAGNHDSAA RLEAPKPLLE SSDIHIVGLI ERKEDGSINY
EKMLIPVRDR NGETVLWCMA IPFLRMGDYP AVAESETLYA DGVSALYKEA YEHALTKKQG
GQGIIAMAHL HTLDAELSDH DKSERVIMGG IEFVPAKAFH EELLYVALGH IHKAQKIGGK
EHIRYSGSPL PMSFSEMNYK HQVVSFDISN GVMSGLEMLE IPVTTELLRV PAKPQPIEAV
LEALLQLPEA TETIHTAPYL EVRVLLEGPE PALRHKIETA LAGKHVRLAK IDVRYPSSAA
EGTGERIASA AQLQELSPLD IFKKIYQEDY ERETPEELVA LFQQVLQEIN TKEE
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