| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4746 |
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| Symbol | |
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| ID | 8360922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5920307 |
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| End bp | 5920852 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644966897 |
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| Product | transferase hexapeptide repeat containing protein |
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| Protein accession | YP_003124382 |
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| Protein GI | 256423729 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
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| TIGRFAM ID | [TIGR03570] sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00152727 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0166501 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATAACT GTCTTATTTA TGGCACGGGA GGACATGCAT TGACAGTAGA ATCGCTGGCG
GTGAAAAATA ATTATGAGGT TGCTGCTTTC TTTGATGATA ATGCGAATAT CGATCACACA
TACAGACAAA AGGCGGTCGT GCCGTATGAT GTTGGATGGT TGCCTGATTG TCCGCTGGTC
GTTGCAGTCG GTAATAACGC AGTAAGAAAA AAAATTGTTT CATTTGTAGC ACATAAATAT
TGTACATTTA TTGACAACGC CGCTTTTATC ACCCATGATG TGCGTATCGG AGAAGGTACA
GTAGTAATGC CTGGCGCGAT TGTACAGGCA GGCGTAAATA TCGGACGGCA TGTTATCCTC
AACATCGGTT GTGCCGTAGA TCATGAAGCT TCAATCGGCG ATTTTGCACA TATTGGCCCC
AGATGTTATA TCGGTGGTGG AGCGGTTATC GGTGAAGGTG TTACGATTGG CGCCGGCGCT
GTAGTTATGA GAAACGTTAA AATTGAAGAC TGGACGAATA TTCCTCCCCT CAGTGTTATT
ACCTGA
|
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| Protein sequence | MDNCLIYGTG GHALTVESLA VKNNYEVAAF FDDNANIDHT YRQKAVVPYD VGWLPDCPLV
VAVGNNAVRK KIVSFVAHKY CTFIDNAAFI THDVRIGEGT VVMPGAIVQA GVNIGRHVIL
NIGCAVDHEA SIGDFAHIGP RCYIGGGAVI GEGVTIGAGA VVMRNVKIED WTNIPPLSVI
T
|
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