Gene Cpin_4720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4720 
Symbol 
ID8360896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5888849 
End bp5891089 
Gene Length2241 bp 
Protein Length746 aa 
Translation table11 
GC content49% 
IMG OID644966873 
Productprotein of unknown function DUF893 YccS/YhfK 
Protein accessionYP_003124358 
Protein GI256423705 
COG category[S] Function unknown 
COG ID[COG1289] Predicted membrane protein 
TIGRFAM ID[TIGR01666] hypothetical membrane protein, TIGR01666
[TIGR01667] integral membrane protein, YccS/YhfK family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0171257 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.00604484 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGGCATT GGATTCAGGA AGTCAGGAAT TTCATCTATA GTTATCATTT CAGTACCGGT 
TTACGTACGA CCATTAGTGT GGTAGTGCCT TCTATCGTAT TTTCCATGAT GGGCGACCTG
CCAATGGGTA TAGTAGCCTC GCTGGGCGCG TTGGCTACGG CCCTGTCAGA CGTACCTGGT
ACCGCGTTGC ATAAACGCAA TGGCATTCTG ACTGCCATCG CCTTTATCTT CCTGACCGCC
CTGGGCACTT CTCTGATCTC ACCCTACCCA TTATTGATGA CCGGCTGGAT ACTGGCCTGT
TGTTTTGCCA ATGGGATGCT GCTGGTCTAC GGTAACCGTG GCGGCAACAT CGGCATCGCC
TGTATGCTGG TAATGGTTTC TATCCTCGGT GAAAACCCCG TAGGACCAGC AGAAGCCTTC
CTGCACTGCC TGGTCATTCT GGGTGGCAGC ATCTGGTACG GCTTCCTCGC CCTCCTGCTC
TGGCAGATAC GGCCCTACCT CAGCGTACAG CAGACCCTTG CGGAATGTAT CATGGAAACG
GCCCACTACC TTGAAGAAAG AGCCGGCTTC TATGCCAAAG ACGCTCATAA GAACTTTGAC
GAGATCTATA AGTCCGTACT GGCTCAGCAG GTGATCGTCA GTGAAAAGCA GGAAGCCGTA
CGCGAACTGC TGCTCAAACG CCGTTCCGCT CAGCAAGGCT CTACCAGTAT CAATAAAAGC
ATGGTGCTGA TCTTTATGGA TATTGTGGAC CTCCAGGAAC AGATTATGGC CTCCCAGACC
GACTATCTGG CCCTCCACAA TGATTTTGGC AGTATGGATA TCCTGGAAAA ATTCCATACG
CTGATCCAGG AGTTTACCGG CGAACTGGAG CTGATTGCCA CAGCGGTGGC CGCCGGACAA
AGATCCCTTC CCCGTGCTAA CCTTCGTCAT GAAATAGATA AGGTACAACA TGCCATAGCC
GATATCCGTA AAACGATGCC GACCCTGAAA GAGCGTACCA AACTGCTTAC GCTCACCAAT
ATCCTGCACA ACCTGCAGGA CATGACACAG CGTATATATA ACCTGCACCG CCTCACCAGA
CTGGAAAGGG TAAAAGACGA AGTGATCGAT CCCCGTTTAC AACTGGCCAG CTTTACCACC
CGCAACCGCT ACGACGTAGA ACCGCTGGTA AACAACCTGA CCTTTGAATC GCATATCTTC
CGTCACGCAT TACGTGTCAG CATCGCTGCC GTCACCGGCT ATTTACTTGG ACAGGTATTC
CACCTGGACA GGGTATACTG GATACTGCTG ACCATCGTCG TCATCCTGAA ACCGGGTTTC
GGTATCAGTA AGGCCAGAAG CTATCAGCGT ATTATCGGCA CGATCACCGG CGCACTTTTT
GCCGCCGCCG TATTATACCT CACGGCCAAT ACTACCGTCA TTTTTATCCT GATGCTGATC
TGTATCCTTG GAGCTTATAG TTTTATGACC CAGCAGTATA CGCTCAGTGT CTTCTTTGTA
ACACCATTTG TCATATTCCT TTTGCATTTC CTGCACCCTG CGCACCTGCA GAATGCTGAA
CTGCGTGTAC TGGATACCTT CATCGGCGTC AGCATCGCCT TCCTGGCCAG TTTACTGTTG
TGGCCCAGCT GGGAACACAA CTATCTGCCC AGTCACATGA GCAAGATGGT AAAAGATAAT
GCCCGTTACC TGGATCATGT AATGCGCCTG TATACCGACA GGGAGTTTGT AATGAACGAT
TATAAACTGG CGAGAAAAGA CACCAACGTC AGTGCCGCTA ACCTTATGTC AGCCTTTCAG
CGTATGCTCT CAGAACCTAA AAGCAAACAG ATACATGGTT CTGAAGTTTA TCATTTTGTG
GTGCTGAACC ACTCCCTGAT GTCGCACATT GCGGCGATGG CCAACTATGG GATGCTGCAT
GGGGTACATT ATCCTAAACC GGAATATAAA CTGCTCAATA ATTATCTGCA GCAGCATTTC
AGCTGTATTG TCGGTTTGAT AGATGATCCG GCAACAAAAA CTACACCGCC GCCGACCAAT
ATGGAGGCAT TGGAAACGCT GGATATTGAA CTGGAAAAGC TGTATCAGCT CAGACAACAG
GAGATCAATG ATGGCAAAGG AGAAACCCCT GTGAGGGAAG ATATGCTGGA AACGAAGATG
GTCCGCGATC AGTTAAATGC GATGTTCTCG CTGCTGAAAG ACATGAAGAA AACGATTGAT
AAAACAATTA AACATCCATA G
 
Protein sequence
MRHWIQEVRN FIYSYHFSTG LRTTISVVVP SIVFSMMGDL PMGIVASLGA LATALSDVPG 
TALHKRNGIL TAIAFIFLTA LGTSLISPYP LLMTGWILAC CFANGMLLVY GNRGGNIGIA
CMLVMVSILG ENPVGPAEAF LHCLVILGGS IWYGFLALLL WQIRPYLSVQ QTLAECIMET
AHYLEERAGF YAKDAHKNFD EIYKSVLAQQ VIVSEKQEAV RELLLKRRSA QQGSTSINKS
MVLIFMDIVD LQEQIMASQT DYLALHNDFG SMDILEKFHT LIQEFTGELE LIATAVAAGQ
RSLPRANLRH EIDKVQHAIA DIRKTMPTLK ERTKLLTLTN ILHNLQDMTQ RIYNLHRLTR
LERVKDEVID PRLQLASFTT RNRYDVEPLV NNLTFESHIF RHALRVSIAA VTGYLLGQVF
HLDRVYWILL TIVVILKPGF GISKARSYQR IIGTITGALF AAAVLYLTAN TTVIFILMLI
CILGAYSFMT QQYTLSVFFV TPFVIFLLHF LHPAHLQNAE LRVLDTFIGV SIAFLASLLL
WPSWEHNYLP SHMSKMVKDN ARYLDHVMRL YTDREFVMND YKLARKDTNV SAANLMSAFQ
RMLSEPKSKQ IHGSEVYHFV VLNHSLMSHI AAMANYGMLH GVHYPKPEYK LLNNYLQQHF
SCIVGLIDDP ATKTTPPPTN MEALETLDIE LEKLYQLRQQ EINDGKGETP VREDMLETKM
VRDQLNAMFS LLKDMKKTID KTIKHP