Gene Cpin_4684 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4684 
Symbol 
ID8360858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5842255 
End bp5843130 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content48% 
IMG OID644966835 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003124322 
Protein GI256423669 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.387596 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.000782233 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACAGA TTATTCTGAC AGGAAGCAGC AGCGGTTTCG GGCTGACTGC CGTGAAGACA 
CTTGCCCTCA AGGGCCACAC TGTATACGCT ACCATGCGTA ATGTCAACGG CGTCAACGCT
GCTGTTGCAA AGGAATTGAC AGACTGGGCA AAGACGCAAC AGGTAAAAGT GATCGTCGTA
GAACTGGATG TGACCAGCAC GACTTCCGTT AACAATGCCA TCGCGGACAT CGCAAAACAA
TCGGGTGGCA GGATCGATGT GCTGATCAAC AATGCCGGTA TTTCTTTTAT GGGTATAGGA
GAGGCCCTGT CTATCGAACA GACGGAACTG CTGTACCAGG TGAACACCAT CGGACCGGAA
CGTACCATGA AAGCAGTGTT GCCGTACATG CACCAACAAA AAGAAGGACT GATCATCAAC
GTTACCAGTG TACAGAGCAG ACAGTATTTC CCTATCCTGA GTACGTACAA CGGTACGAAA
GCCGCATTGG ATGCGGTGAC CATGGGATAT CACTACGAAC TGAAGTCATC CGGTATTGAC
GTGGTAAGCA TACAGCCAGG CGCTTATCAG ACCACCGATA TCACTACCAA AAGTATCAGT
GGTAACAATG CAGCGGTAGA AAGTCAGTAT GGTGCAGATG TACTCGATTT CAAACGTGCA
CTGTTTAAAT TCTTCGAACC AACTCCTGCA AGTCCTGATC CGAAAGAAGT AGCTGATGTG
ATGCTGAAAC TGGTGGAATT ACCACAGGGT CAAAGACCTG TTTCTAATGT AGTCGGCGGT
GGTGGCAATA CCGACAAGAT TGAAGTAATG AATGAGACGA TGCGACAGAT TGTAGAGGGA
ACAGTGGAGT TTTTGCCGAA AGCGTTCCCG GCGTGA
 
Protein sequence
MKQIILTGSS SGFGLTAVKT LALKGHTVYA TMRNVNGVNA AVAKELTDWA KTQQVKVIVV 
ELDVTSTTSV NNAIADIAKQ SGGRIDVLIN NAGISFMGIG EALSIEQTEL LYQVNTIGPE
RTMKAVLPYM HQQKEGLIIN VTSVQSRQYF PILSTYNGTK AALDAVTMGY HYELKSSGID
VVSIQPGAYQ TTDITTKSIS GNNAAVESQY GADVLDFKRA LFKFFEPTPA SPDPKEVADV
MLKLVELPQG QRPVSNVVGG GGNTDKIEVM NETMRQIVEG TVEFLPKAFP A