Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4684 |
Symbol | |
ID | 8360858 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 5842255 |
End bp | 5843130 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644966835 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_003124322 |
Protein GI | 256423669 |
COG category | [R] General function prediction only |
COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.387596 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.000782233 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAACAGA TTATTCTGAC AGGAAGCAGC AGCGGTTTCG GGCTGACTGC CGTGAAGACA CTTGCCCTCA AGGGCCACAC TGTATACGCT ACCATGCGTA ATGTCAACGG CGTCAACGCT GCTGTTGCAA AGGAATTGAC AGACTGGGCA AAGACGCAAC AGGTAAAAGT GATCGTCGTA GAACTGGATG TGACCAGCAC GACTTCCGTT AACAATGCCA TCGCGGACAT CGCAAAACAA TCGGGTGGCA GGATCGATGT GCTGATCAAC AATGCCGGTA TTTCTTTTAT GGGTATAGGA GAGGCCCTGT CTATCGAACA GACGGAACTG CTGTACCAGG TGAACACCAT CGGACCGGAA CGTACCATGA AAGCAGTGTT GCCGTACATG CACCAACAAA AAGAAGGACT GATCATCAAC GTTACCAGTG TACAGAGCAG ACAGTATTTC CCTATCCTGA GTACGTACAA CGGTACGAAA GCCGCATTGG ATGCGGTGAC CATGGGATAT CACTACGAAC TGAAGTCATC CGGTATTGAC GTGGTAAGCA TACAGCCAGG CGCTTATCAG ACCACCGATA TCACTACCAA AAGTATCAGT GGTAACAATG CAGCGGTAGA AAGTCAGTAT GGTGCAGATG TACTCGATTT CAAACGTGCA CTGTTTAAAT TCTTCGAACC AACTCCTGCA AGTCCTGATC CGAAAGAAGT AGCTGATGTG ATGCTGAAAC TGGTGGAATT ACCACAGGGT CAAAGACCTG TTTCTAATGT AGTCGGCGGT GGTGGCAATA CCGACAAGAT TGAAGTAATG AATGAGACGA TGCGACAGAT TGTAGAGGGA ACAGTGGAGT TTTTGCCGAA AGCGTTCCCG GCGTGA
|
Protein sequence | MKQIILTGSS SGFGLTAVKT LALKGHTVYA TMRNVNGVNA AVAKELTDWA KTQQVKVIVV ELDVTSTTSV NNAIADIAKQ SGGRIDVLIN NAGISFMGIG EALSIEQTEL LYQVNTIGPE RTMKAVLPYM HQQKEGLIIN VTSVQSRQYF PILSTYNGTK AALDAVTMGY HYELKSSGID VVSIQPGAYQ TTDITTKSIS GNNAAVESQY GADVLDFKRA LFKFFEPTPA SPDPKEVADV MLKLVELPQG QRPVSNVVGG GGNTDKIEVM NETMRQIVEG TVEFLPKAFP A
|
| |