| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4662 |
|---|
| Symbol | |
|---|
| ID | 8360835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5817939 |
|---|
| End bp | 5819255 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644966812 |
|---|
| Product | Na+/H+ antiporter NhaA |
|---|
| Protein accession | YP_003124300 |
|---|
| Protein GI | 256423647 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3004] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR00773] Na+/H+ antiporter NhaA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000000000933832 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAA CTCCTATTGA AAAAATACTT AGACCTATAC ATAGATTCAT TCATCAGGAA
TTTACTGGAG GAATCGTACT TTTTATTAGT GTCATAATTG CAATTACCTG GGCTAACTCA
CCTTGGCACG AATCATATCA TCACCTGTGG GAGAAAAACC TGGCTGTCTC ATTTTCGGGG
ATGGGCTTAG ATCAGCCACT GCATATATGG ATTAATGATG GTTTAATGGC ATTATTCTTT
TTTGTCATTG GATTGGAATT GAAGCGCGAG TTTATTGCGG GGGAACTTTC TTCGATCAAA
AAGGCTTCTT TGCCAATGGT AGCAGCATTA GGCGGAATGC TGGTGCCAGC ATTTATATAT
TTTCTTTTAA ATGCTAGTCG GCCTTCCTCT GGTGGTTGGG GAATACCAAT GGCTACTGAT
ATCGCATTTG CACTAGCGTT GCTATCGCTT GCCGGCAAGA GAATACCATC ATCTGTAAAA
GTGTTTCTGT CAGCACTGGC GGTTGCAGAT GACCTTGGGG CAGTTATAGT AATTGCGCTA
TTCTATACCG CTAAAATTGC CTATTTCCCG CTAATCATAG GTGTTGGGCT ATTACTACTA
CTAACGCTAG GGAATGCACT TGGCATACGA AGCACATTAT TTTATTTATT GATAGGAATT
TGTGTATGGG GCTGCTTTCT TTCCTCAGGG GTTCATGCCA CTATTGCTGG AGTACTAGTA
GCGTTTACTA TTCCCGCACG CACAAAGATA GACGAAGATG AATATGTCAG TTGCCTAAAT
GCTTACACAA ATCAGTTCAG AGAAGCTATT CCATTAAAGG GATCATTAAC GACTGCCGAG
CAACATCAAA CAATTGAAAG AATTAAACAA CTTTCTCTTG ATGCAGAGAC CCCTCTTCAA
AAAATCGAAT ATGGTCTGCA TCCGTGGGTT GCGTTTGTTA TCATGCCGCT TTTCGCACTT
GCCAATTCAG GAATGCTCAT TAATAGCAGC TTTTTTACTG CATTGCTAAA CCCGGTTAGC
CTGGGCGTCG CCATTGGGTT ACTAGCAGGT AAGTTTATTG GAGTCTTTTC ATTTACATGG
TTGATGGTGA AATTAAAAAT CGCGGATCTA CCTCAATATG CTACATGGAG GCATATACTA
GGAGTCTCTG TACTTGCAGG CGTTGGGTTT ACAATGTCCT TATTTATAAC AGGATTAGCC
TTTTCAGATC CTGAAATGGT TGATCAGTCT AAATATGGAA TCCTGATATC ATCAATTATT
GCGGGATCGC TTGGCATTAT AATTTTAAGA ACTACACGAT ATAAATCAGA TAATTAA
|
|---|
| Protein sequence | MAKTPIEKIL RPIHRFIHQE FTGGIVLFIS VIIAITWANS PWHESYHHLW EKNLAVSFSG
MGLDQPLHIW INDGLMALFF FVIGLELKRE FIAGELSSIK KASLPMVAAL GGMLVPAFIY
FLLNASRPSS GGWGIPMATD IAFALALLSL AGKRIPSSVK VFLSALAVAD DLGAVIVIAL
FYTAKIAYFP LIIGVGLLLL LTLGNALGIR STLFYLLIGI CVWGCFLSSG VHATIAGVLV
AFTIPARTKI DEDEYVSCLN AYTNQFREAI PLKGSLTTAE QHQTIERIKQ LSLDAETPLQ
KIEYGLHPWV AFVIMPLFAL ANSGMLINSS FFTALLNPVS LGVAIGLLAG KFIGVFSFTW
LMVKLKIADL PQYATWRHIL GVSVLAGVGF TMSLFITGLA FSDPEMVDQS KYGILISSII
AGSLGIIILR TTRYKSDN
|
|---|
| |