Gene Cpin_4543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4543 
Symbol 
ID8360716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5668540 
End bp5669715 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content48% 
IMG OID644966698 
Productaminotransferase class V 
Protein accessionYP_003124186 
Protein GI256423533 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0520] Selenocysteine lyase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.119486 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTC AAAAGATCAG AAGAGATACT ATCGGCTGTG AACAGCTAAT TCATTTGAAT 
AATGCAGGTG CCGCGCTGAT GCCGGCAGTG GTAGCCAATG GTATCAGGGA TTATATTTCA
GCAGAAGAAA CCGGCGGTGG TTATGAGACT GCTGACAAGT ACAGCGCTGA ACTGGATCAG
TTCTATACCT ACATGGCCAA ACTGTTGCAT TGCAGATCCG AAAACATCGC CTTTACCACC
AATGCTACTG ACAGCTTCAA CCGTGCCTTG TCTGCCGTGC CATTCAAACA GGGAGACGTC
ATCCTGACGA CAGAAAACGA CTACCCTTCT AATTTTATCG CCTTTATTTC TCTGCAGAAA
AGACTGGGAA TAGAGATCGT CACAGTGCGA AATACACCTT CCGGTGAAAC TGACCTGGAA
GACCTGGAAC AAAAGATCAA CACACTTCAA CCACGCCTTG TGTCAGTCAC ACATGTACCT
ACCAGTTCCG GACTCGTACA ACCGGTAGCC GCAATCGGTA ATATCACTAA ACGTTATGAT
ACTTTGTATC TGCTGGATGC GTGTCAATCC GTCGGACAAC TAGCCGTTGA CGCCATTGCT
ACAGGCGCTG ATTTCATCAG CGGCACCTTC CGTAAATTCC TGCGGGGCCC CAGAGGCGCT
GGCTTTTTAT ATATCTCTGA TAAAGCATTA CAAAGCGGAT TAGAACCATT GTTCCCGGAT
CTGAGAGGCG CCGAATGGAC CGGTATCCAT GCCTATACAC ACCGGGAAGA TGCCAAACGT
TTTGAAGACT GGGAAACAGC CTTTGCGCTG ATGGCGGGAA GTACTGCTGC CATAAAATAC
CTGCTGGATA TAGGAATACA GGAGGTGCAA ACCCGGAATG AAACGCTTAC CGCTTACCTG
CGGCATCAGC TAGGCAATGT ACCTGGCGTA CAGTTACAGG ACAAAGGAAA ACACCCCTGC
AGTATCGTTA CCTTCAGTAT AGCGAACCAG GAACCGGAGC GTTTCAAACA ATATTTCAAA
CAACACGGCG TCAATATTTA CACCACTGCC AGGTCGTCTG CTATCATTGA TTTCACACAG
AAGGGCATTG AATGGGTGGC AAGAGTATCA CCGCACTATT ACAACACGGA AGCAGAGATC
GACCGGTTTA TGCAACTGCT GACTGCGATC GCTTAA
 
Protein sequence
MDIQKIRRDT IGCEQLIHLN NAGAALMPAV VANGIRDYIS AEETGGGYET ADKYSAELDQ 
FYTYMAKLLH CRSENIAFTT NATDSFNRAL SAVPFKQGDV ILTTENDYPS NFIAFISLQK
RLGIEIVTVR NTPSGETDLE DLEQKINTLQ PRLVSVTHVP TSSGLVQPVA AIGNITKRYD
TLYLLDACQS VGQLAVDAIA TGADFISGTF RKFLRGPRGA GFLYISDKAL QSGLEPLFPD
LRGAEWTGIH AYTHREDAKR FEDWETAFAL MAGSTAAIKY LLDIGIQEVQ TRNETLTAYL
RHQLGNVPGV QLQDKGKHPC SIVTFSIANQ EPERFKQYFK QHGVNIYTTA RSSAIIDFTQ
KGIEWVARVS PHYYNTEAEI DRFMQLLTAI A