Gene Cpin_4501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4501 
Symbol 
ID8360674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5603425 
End bp5604375 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content45% 
IMG OID644966656 
ProductAlpha-N-arabinofuranosidase 
Protein accessionYP_003124144 
Protein GI256423491 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3507] Beta-xylosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.570213 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.69004 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCAAT TGAAGATCAG TCAGATGAAG GGAATGATCA TGCGTTCGTT CTCCATCGCA 
TGTATGGCAT TGTCGGCGCT TTCATCCAGT GCACAAAAGA ACCCGTTTAT TACAGATATA
TACACTGCAG ATCCTTCGGC GCATGTATGG TCAGATGGCA GATTATACGT ATACGCTTCT
CATGATATAG CACCGCCCCG TGGATGCGAT CTGATGGACC AGTATCATGT TTTCTCTACA
GATGATATGG TAAACTGGAA AGATCATGGA GAGATCCTGC GTGCCAGCCA GGTTCCCTGG
GGAAGAAAGG ATGGTGGTTT TATGTGGGCG CCTGATTGTG TATTCAGAAA AGGTACCTAT
TATTTCTATT TCCCGCATCC AAGCGGCGAT GAATGGAATA AGACCTGGAA GATAGGCGTG
GCGACGAGCA ACAGTCCTGC TGAAGGATTT AAGGTACAGG GTTTCCTGCC TGATCTGGAA
CCCATGATCG ATCCATGTGT ATTCATCGAT GACGACGGTC TGGCCTATTT CTATTATGGC
GGTGGCGGTG TCTGTAAAGG TGGTAAACTG ATGGATAATA TGCTGGAAAT AGACGGCACT
ATGCAACCAA TGGAAGGGCT GGTAGATTTT CATGAAGCTA CCTGGGTACA CAAACGCGAT
GGCGTGTATT ACCTGTCTTA TGCTGATAAT AACGACAAAG ACGGTAAGCA CAACCAGATG
CGTTATGCGA CCAGTGACAG TCCGCTGGGA CCATGGACTT ACCGTGGCAT CTATATGGAT
CCGACAGACA GTTATACCAA TCACGGTTCT ATTGTAGAAT ACAAAGGACA GTGGTATTCT
TTCTATCATA ATAGTGCATT GTCACATCAT GACTGGTTAA GGTCTATTTG CGTGGACAAA
CTGTTTTATA ACACTGATGG CACCATCCAG AAAGTAGTAC AAACGAAATA A
 
Protein sequence
MQQLKISQMK GMIMRSFSIA CMALSALSSS AQKNPFITDI YTADPSAHVW SDGRLYVYAS 
HDIAPPRGCD LMDQYHVFST DDMVNWKDHG EILRASQVPW GRKDGGFMWA PDCVFRKGTY
YFYFPHPSGD EWNKTWKIGV ATSNSPAEGF KVQGFLPDLE PMIDPCVFID DDGLAYFYYG
GGGVCKGGKL MDNMLEIDGT MQPMEGLVDF HEATWVHKRD GVYYLSYADN NDKDGKHNQM
RYATSDSPLG PWTYRGIYMD PTDSYTNHGS IVEYKGQWYS FYHNSALSHH DWLRSICVDK
LFYNTDGTIQ KVVQTK