Gene Cpin_4401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4401 
Symbol 
ID8360574 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5480508 
End bp5482694 
Gene Length2187 bp 
Protein Length728 aa 
Translation table11 
GC content48% 
IMG OID644966560 
Productlipolytic protein G-D-S-L family 
Protein accessionYP_003124048 
Protein GI256423395 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2755] Lysophospholipase L1 and related esterases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAACAG TACTACTACT GCTGTTTCTA GCCATTGACA GCACCTATAG CCACGCCCAG 
AGCTGCACGA CCCCTTACCG CATCGTTGTC CTCGGCTCAT CCACCGCCGC CGGCACCGGT
GCAACCCCCA ACCATGGATG GGTGGCTCTT TACACACAAT ATCTGAAAAG CATTAACACC
AACTATCAGG TATTCAACCT GGCAGTCGGC AACTACACCA CCTACGACAT TAATCCGACC
GGCTACGTAC CACCCGCAGC AAGACCTGCA CCAGATACCG CACACAACAT TACAAAGGCA
TTATCACTAC AACCACACGC GATCATCATC AACCTGCCGA CAAACGACGT AGGCCGTGGT
TACACACTCG CAGAACAGCA GGCAAATTAC CAACGCGTGC TGAGTGCTGC AAATGCGCGC
GGAGTAAAGG TATGGGTCGC TACGACGCAA CCCCGTAACG ACTATTCCGC ACAAATGGTA
GCGAACCTGA AAGCGATGCG CGACTGGACC TTTAATTATT TCGGCGAAAG ATCAATTGAT
TTCTGGACAG GTATGAACGA ACCCAATGAT TCCATCAAAC GGGCATATAG TTATGGCGAT
GGTATTCACC TTAATGACGC AGGACATTAT GTATTGTATA CAAGGGTAGT GGCCAGGGGC
ATTCCGGATG TGCTTTGCAA TGGGAACCCG CCACAGCCGC AGATACCAGT GGTGCTGACG
GCCTTTACAT TGACGAACAA TGCGAACCGG TTCAGATTAA ACTGGACGAC TGCCTATGAG
AAGAATGTAA GCAGGTTTGT TGTAGAGCGC AGCAGTGATT CGCTTCGGTT TTCGGTGTTG
GCGAATGTTA TGGCGACAGG CAATGACAGC ACGGGGAAAT CATATACTTA TCCGGATACT
GCTTTGCAGA CGATGAAGCA GTTTTATCGT CTGAATGTGA TTGTGGCAGA CACACACTAT
ATCTATACAG GTATTGTGAG AGGCGTGCCT GTACCCGCGC AGGTACCGGT GATAATAACG
GCCTTGAGTG TTACCAATAA TACCAGCAAG TTACAAGTCA ACTGGACCAC CGGTTATGAG
AGAAGCGTAA CACGCTTTGC GGTGGAACGC AGCAGTGATT CATTGCGATT TGTCGTGCTG
GCTAATGTTG CGGGAACAGG CAATGGAAGT ACGGGGAAAT CATATATTTA TCTGGATACC
GGTATACATA AGACAAAACA GTTTTACCGC CTGAATGTAA TTGTTGCGGA TACGCATTAT
ATCTACAGCA GCATCGTGAG AGGAATACCG GATACGGCAT ATGGCGCGAA CACTTACTTC
AATATTACGG GTTTCCAGGT ACAGTCTAAC CAGAACAAGC TACAATTGTT GTGGTATAGT
AACAACGAGA AAAGTACCAG GCAGTTTATT ATTGAACGCA GTGCTGATTC GTCGAACTGG
AACGCTGTCG GCACATTAGC GGCAGCAGGC AATTACCCCG GATCCCGTTT CTATAACTTT
ACGGATCCAA ATATTTACAA CCGCCTGCAA TATTACCGGT TGAACATGGA GACGACGACA
GGACTACATT TCTTTAGTAC AGTGATAAAA GGGATGCCTG ACACGATGTA CACGCAACCT
TTCAGGATAG CTAGTCTCAG CGTTGCATTA CAGCAAACAA AGGCACAGCT CAGGTGGACG
ACCAGCGCAG AAAAGAATAC CAAGAGTTTT ACGGTAGAGC GTAGTCCGGA TGCGAGTGTC
TGGACGGCAA TCGGTACCGT GAATGCAGCC GGTAATTCAA CAACAACAAG GAATTACACC
TTCCAGGATC CGGTGACACA AACCGGTACC GTTTCCTACA GGTTAAATAT GCTGACACAC
GACAACAGAC GATTCTTCAG CAGTATCGTA AAATTGACTT TCCCGTCTAC GCTGCGTGCA
GCAGATAAAA AAGGCTTCGA TGCATTTTAT ACGACCGAAG CAGGACCGAT ACGTATCGCA
CCGAATCCGG TAAAGGAAAA TACCTGGTTA CTCGGATTAA CAGCAGGTAA CCATGACGTA
CGGATCTTTG ATGCCGGGGG AAGAATGATA TATTGTAATC CGGTGTTCCA GACAGGCAGG
AGTATTGATG CCAGCCGTTG GGCACAGGGA CTGTATATTA TCATCATAGA CGATGGCCGG
CATCAGCTGA AGCTGATGAA GCAATAA
 
Protein sequence
MRTVLLLLFL AIDSTYSHAQ SCTTPYRIVV LGSSTAAGTG ATPNHGWVAL YTQYLKSINT 
NYQVFNLAVG NYTTYDINPT GYVPPAARPA PDTAHNITKA LSLQPHAIII NLPTNDVGRG
YTLAEQQANY QRVLSAANAR GVKVWVATTQ PRNDYSAQMV ANLKAMRDWT FNYFGERSID
FWTGMNEPND SIKRAYSYGD GIHLNDAGHY VLYTRVVARG IPDVLCNGNP PQPQIPVVLT
AFTLTNNANR FRLNWTTAYE KNVSRFVVER SSDSLRFSVL ANVMATGNDS TGKSYTYPDT
ALQTMKQFYR LNVIVADTHY IYTGIVRGVP VPAQVPVIIT ALSVTNNTSK LQVNWTTGYE
RSVTRFAVER SSDSLRFVVL ANVAGTGNGS TGKSYIYLDT GIHKTKQFYR LNVIVADTHY
IYSSIVRGIP DTAYGANTYF NITGFQVQSN QNKLQLLWYS NNEKSTRQFI IERSADSSNW
NAVGTLAAAG NYPGSRFYNF TDPNIYNRLQ YYRLNMETTT GLHFFSTVIK GMPDTMYTQP
FRIASLSVAL QQTKAQLRWT TSAEKNTKSF TVERSPDASV WTAIGTVNAA GNSTTTRNYT
FQDPVTQTGT VSYRLNMLTH DNRRFFSSIV KLTFPSTLRA ADKKGFDAFY TTEAGPIRIA
PNPVKENTWL LGLTAGNHDV RIFDAGGRMI YCNPVFQTGR SIDASRWAQG LYIIIIDDGR
HQLKLMKQ