| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4307 |
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| Symbol | |
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| ID | 8360480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5365131 |
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| End bp | 5367038 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644966468 |
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| Product | sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_003123956 |
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| Protein GI | 256423303 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.056389 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAAC ACATTCTCAT CGTAGAGGAC CAATTTGTAG AAGCTGATTA TTTGCGCCTG
TTACTGGAAA AAGCCGGTTA TATCATTACC GGTATTGCGC GCTCAGTACC CCAGGCGCAG
AAAATGATCA AAGAACAAAG GCCCGATTTT GTTCTTTTAG ATATCTTCCT CAAAGGAAAG
CAAACCGGCA TTGATCTGGC GAAGATGCTG GCTGCGGATA ATATTCCGTT TGTATATCTG
TCCGCCAACT CCAACGAGGA AATATTGACA TGCGCAAAAC AAACGCAGCC ATATGGCTTC
CTGGTAAAAC CTTTCAGGGA GAAAGACCTG CTGGTAGCAC TTGAAATAGC CCGTTACCGT
CACGCGCATA GTACCGAAGC CCGTTATCAT AAGGAAATGG AGCTACGTAA AGTATTAAGG
GCTATTCCCG ATGATACCGG CGCCTGGTCG CAAAAGATGC TGACTATAGC GACAGCACTG
CAATCTTATA TGCCATTTGA TTTCATTACG ATGCAATTTG ACCATCTGCA AATGCTTGGC
TTTTTGAGGA TCGGATTTAA TGAATATCAG ATCATTGGCA TGGAAGAGCT GGCGGTCATC
AGCGGAAAGA AAATAGATGA ACTGATGACA TTACAATTAC AGCATCCGGT GACGGAAACA
GCTGTGATTT ACGATGATAC GGCTTTTCAG CATATCTGTA AACAGCCTTG TTTAAAAAAG
TTATTCGCGG CTACCTTCCG GTTAAAAACC CATCTGGAAA TGCCGATGCA GATGATCGAC
CGAAAGCCAT TTAGTCTGGG GCTATATAGC AGAAGGGCCG ATGTGTATGC TACGGAGCAT
ATTGAGCTCC TTGAAAGGAT GCAGTTTGCA TTGATGCAGG CGATTGAGAA AATCAGTGTA
GCAGATAAGT CACAAGGTGA TATCTATGCT GCAGATAACG TAAATATCCT GGAAGGCTTT
GAAGGGATTG TGGGTAAAAG TCACCTGTTG TTGTCAGTCT TTGATCATAT TTCGCAGGTG
GCGCCTTCTG ATACGTCTGT TCTGATACTG GGTGAGAGCG GGACAGGCAA GGAAAAGATC
GCCAATAGCA TACATGAATT GTCACCTCGT AAAGGACAAC CATTTATCAA GCTGAATTGT
GCGGCATTAC CAGCAGGACT CATCGAATCA GATCTCTTTG GGCATGAAAA AGGATCTTTT
ACAGGTGCGC TCGAAAGGAA GATCGGTAAA TTTGAAAGAG CTGACGGAGG AACGATATTC
CTGGACGAAG TCGGTGAAAT GCCCTTGGAA TTGCAGGTGA AATTATTGCG GGTTTTGCAG
GAGAAAGAAA TTGAAAGGGT AGGAGGAACT GATACATTAA GGGTAGATGT ACGGGTCATC
GCAGCTACGA ATAAAAATCT CGAAAAGGAA GTCGCTGAAG GCCGTTTTCG GCTTGACCTC
TATTACCGAT TGAATGTTTT TCCGATCATA TTACCTCCTT TGCGTGACAG ACGGGAAGAT
ATCCCATTGT TGGCATATCA CTTTATGAAT CATTACAGTC ATAAGGCAGG CAAAAAGATC
TGTGGTATAT CAGAGAGCGT GTTAAAGAAG ATGATGGCTT ATAACTGGCC GGGTAATGTC
CGGGAACTTG AGCATTTGGT TGAAAGAAGT GTGTTGCTAA CGAAGGGGAC TGTTATTGAA
AATATATTGT TGCCGACAAT AGAAGTGAAG CAAGGCACGG CAGGGCAAGA GGAAAAGACG
ATGAAAACAA TCGTAGAAAA TGAAAGGGAT TATATCATTT CTGTACTGAA GAAAAGTAAC
GGCCGGATAT GGGGACCGGG TGCGGCAGCA GAAGTCTTGA ATATAAACCC TTCTACGTTA
AAATCCAAGA TGAAGAAGTT GGGCATAAAG AAGGAATATA TTGAGTAA
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| Protein sequence | MKEHILIVED QFVEADYLRL LLEKAGYIIT GIARSVPQAQ KMIKEQRPDF VLLDIFLKGK
QTGIDLAKML AADNIPFVYL SANSNEEILT CAKQTQPYGF LVKPFREKDL LVALEIARYR
HAHSTEARYH KEMELRKVLR AIPDDTGAWS QKMLTIATAL QSYMPFDFIT MQFDHLQMLG
FLRIGFNEYQ IIGMEELAVI SGKKIDELMT LQLQHPVTET AVIYDDTAFQ HICKQPCLKK
LFAATFRLKT HLEMPMQMID RKPFSLGLYS RRADVYATEH IELLERMQFA LMQAIEKISV
ADKSQGDIYA ADNVNILEGF EGIVGKSHLL LSVFDHISQV APSDTSVLIL GESGTGKEKI
ANSIHELSPR KGQPFIKLNC AALPAGLIES DLFGHEKGSF TGALERKIGK FERADGGTIF
LDEVGEMPLE LQVKLLRVLQ EKEIERVGGT DTLRVDVRVI AATNKNLEKE VAEGRFRLDL
YYRLNVFPII LPPLRDRRED IPLLAYHFMN HYSHKAGKKI CGISESVLKK MMAYNWPGNV
RELEHLVERS VLLTKGTVIE NILLPTIEVK QGTAGQEEKT MKTIVENERD YIISVLKKSN
GRIWGPGAAA EVLNINPSTL KSKMKKLGIK KEYIE
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