Gene Cpin_4109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4109 
Symbol 
ID8360282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5114450 
End bp5115259 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content47% 
IMG OID644966281 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003123770 
Protein GI256423117 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.00421935 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGAAAG TAGCTTTGAT AACAGGGGCA TCCACAGGTA TAGGAGAGGC CTTTGCCAGA 
CGGTTAGCCG CCGCAGGACA CCACCTTATG TTAGTTGCCC GTAACGGAGA GAAATTACAG
GCTTTAAGCC AACAATTAAT GGCTCAGCAC AAGGTTAAGG TATATTATCA GTCCCTGGAT
CTATCGATTG CAGATGCAGA TCAGCAGCTG GTCGCCGAGG TAGCTGATAA GGGACTGGAT
GTCGATCTGC TGATAAATAA CGCGGGTATC GGCAGTGCAG GTGATTTCAC TTATTTACCA
CTTGCCGGCG AGTTGCGCAT GATGCAGTTG AATATGCAGA CCCTGGTGGC ACTGACCCAT
CATTACCTTA TCCCGATGCG GATACGCAAA CAGGGTACTG TTATAAACGT GGCTTCTATG
GCATGTTTCC AACCATCGCC TTTTATGGCT ACCTATGCTG CCTCTAAAGC ATTCGTACGC
TCTTTTACAG AAGCTGTTGC AGAAGAAAAC AGCCCTTTCA ATATACAGGT CATGTTGTTA
TGTCCTGGCG CTACAGAAAC CAGTTTTTTT GACAATGCGC AGATGAAGAA AGATGACCGG
CAAACCATTC TGGGCAATAC TCAATTACAA ACTCCTGAGC AAGTGGTAAC GGCCGCCCTG
AAGGGATTAC AAAAAGGAAA GCGGATCACT ATCTCCGGAA GTAAGAATCT GCTGCTCATG
AGGATCGCTT ACTTTTTTCC TAATAAAATG ATCACCCGTA TTTTTGCGAA GGCTTTCCGC
CCACATTTCC AGCAACAGGC ATCCTCTTAA
 
Protein sequence
MTKVALITGA STGIGEAFAR RLAAAGHHLM LVARNGEKLQ ALSQQLMAQH KVKVYYQSLD 
LSIADADQQL VAEVADKGLD VDLLINNAGI GSAGDFTYLP LAGELRMMQL NMQTLVALTH
HYLIPMRIRK QGTVINVASM ACFQPSPFMA TYAASKAFVR SFTEAVAEEN SPFNIQVMLL
CPGATETSFF DNAQMKKDDR QTILGNTQLQ TPEQVVTAAL KGLQKGKRIT ISGSKNLLLM
RIAYFFPNKM ITRIFAKAFR PHFQQQASS