Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4109 |
Symbol | |
ID | 8360282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 5114450 |
End bp | 5115259 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644966281 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_003123770 |
Protein GI | 256423117 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.00421935 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGAAAG TAGCTTTGAT AACAGGGGCA TCCACAGGTA TAGGAGAGGC CTTTGCCAGA CGGTTAGCCG CCGCAGGACA CCACCTTATG TTAGTTGCCC GTAACGGAGA GAAATTACAG GCTTTAAGCC AACAATTAAT GGCTCAGCAC AAGGTTAAGG TATATTATCA GTCCCTGGAT CTATCGATTG CAGATGCAGA TCAGCAGCTG GTCGCCGAGG TAGCTGATAA GGGACTGGAT GTCGATCTGC TGATAAATAA CGCGGGTATC GGCAGTGCAG GTGATTTCAC TTATTTACCA CTTGCCGGCG AGTTGCGCAT GATGCAGTTG AATATGCAGA CCCTGGTGGC ACTGACCCAT CATTACCTTA TCCCGATGCG GATACGCAAA CAGGGTACTG TTATAAACGT GGCTTCTATG GCATGTTTCC AACCATCGCC TTTTATGGCT ACCTATGCTG CCTCTAAAGC ATTCGTACGC TCTTTTACAG AAGCTGTTGC AGAAGAAAAC AGCCCTTTCA ATATACAGGT CATGTTGTTA TGTCCTGGCG CTACAGAAAC CAGTTTTTTT GACAATGCGC AGATGAAGAA AGATGACCGG CAAACCATTC TGGGCAATAC TCAATTACAA ACTCCTGAGC AAGTGGTAAC GGCCGCCCTG AAGGGATTAC AAAAAGGAAA GCGGATCACT ATCTCCGGAA GTAAGAATCT GCTGCTCATG AGGATCGCTT ACTTTTTTCC TAATAAAATG ATCACCCGTA TTTTTGCGAA GGCTTTCCGC CCACATTTCC AGCAACAGGC ATCCTCTTAA
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Protein sequence | MTKVALITGA STGIGEAFAR RLAAAGHHLM LVARNGEKLQ ALSQQLMAQH KVKVYYQSLD LSIADADQQL VAEVADKGLD VDLLINNAGI GSAGDFTYLP LAGELRMMQL NMQTLVALTH HYLIPMRIRK QGTVINVASM ACFQPSPFMA TYAASKAFVR SFTEAVAEEN SPFNIQVMLL CPGATETSFF DNAQMKKDDR QTILGNTQLQ TPEQVVTAAL KGLQKGKRIT ISGSKNLLLM RIAYFFPNKM ITRIFAKAFR PHFQQQASS
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