| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4043 |
|---|
| Symbol | |
|---|
| ID | 8360216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5029993 |
|---|
| End bp | 5031015 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644966216 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003123705 |
|---|
| Protein GI | 256423052 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.138732 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0406215 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGA TAAAAGAACG CACTTTACAG GCGCCGATCG ACTCCCAATT TGATGGCGCA
TCTACCGCTT CGGATGTAAT TCGTGGAGTC GACCTGTCGG GAAAGACGGC GATCGTCACC
GGAGGATACG CGGGTATCGG TACCGAAACA AGCAAAGTTT TGGCGAAGGC CGGGGCAAAA
GTGATCGTAC CGGCGCGTGA TGTTAAGAAG GCAGCTGACG CATTGGCAGG AATTGAAGGA
GTGACTATCG AACAGATGGA CCTCATGGAT CCGGCGTCAA TTGATGCATT TACCGTAAAA
TTTCTGACTG GCGGACAGCC ATTACATATC CTCATCAACA GCGCTGGGAT CATGGCGAAT
CCACTTACCC GGGATGCGAG AGGGTTCGAA TCGCAGTTCG CCACCAACCA CCTTGGACAT
TTCCAGTTGA CCCTCGGTCT CTGGCCGGCG TTGAAAAAAG CACAGGGCGC CAGAATTGTG
GCCTTGTCTT CCTGGGGGCA TCGTTATTCG CCGGTGGTAT TTGAGGATAT CAATTTTGAG
CATCGTCCGT ATGATCCGTG GAAGGCGTAT GGTCAGTCGA AAACGGCGAA TGTCCTGTTT
GCGGTAGAAG CGGATCGTCG TGGGCAGGCA GATGGGATAC GCGCTTTTGC GGTGCATCCG
GGGAGTATCG TCAGTACAGA TCTGAAGCGC TATATACCTG AGGAACAATT GATTCAGATG
GGTGCGTTGG ACAAGGCCGG TAATCCGGTG ATTGATCCGG CCAGGCAGCT GAAGACTGTT
GAGCAAGGGG CGGCGACTAG TGTGTGGTGT GCGACTAGTC CTTTGTTATT TGGAAAAGGC
GGGGTGTATT GTGAGAATTC GGACGTTTCG CCGGTGGTGG AAAGTGATGG TACTCAGGGG
AGTAATGATC TGACGCAACG GAAAGCGTCG AAGGCGTTTG GGGTGTTGCC ACATGCGATT
GCTGCGGAGG ATGCGGTGCG GTTGTGGCAG GTGAGTGAGC GGATGATTCA ATCGGCTTTT
TAG
|
|---|
| Protein sequence | MEQIKERTLQ APIDSQFDGA STASDVIRGV DLSGKTAIVT GGYAGIGTET SKVLAKAGAK
VIVPARDVKK AADALAGIEG VTIEQMDLMD PASIDAFTVK FLTGGQPLHI LINSAGIMAN
PLTRDARGFE SQFATNHLGH FQLTLGLWPA LKKAQGARIV ALSSWGHRYS PVVFEDINFE
HRPYDPWKAY GQSKTANVLF AVEADRRGQA DGIRAFAVHP GSIVSTDLKR YIPEEQLIQM
GALDKAGNPV IDPARQLKTV EQGAATSVWC ATSPLLFGKG GVYCENSDVS PVVESDGTQG
SNDLTQRKAS KAFGVLPHAI AAEDAVRLWQ VSERMIQSAF
|
|---|
| |