| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4000 |
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| Symbol | |
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| ID | 8360173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 4976737 |
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| End bp | 4978665 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966174 |
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| Product | transglutaminase domain protein |
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| Protein accession | YP_003123663 |
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| Protein GI | 256423010 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000741085 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0455178 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCGT TTTTAACCAA AAAATACGCA TCCGCAGTTT GTTACTGTGT ATGCGTATTA
TTGTCCATAG GCCCGGCTTT TGCCGGAGAC CCGATTTATC CGGCCATGCT GATTCCAGAT
TCTCTGAAGA AGAATGCACA CGCGGTAACG CGTCTGGAAG AGGTGACCGT AAAGGTCAAT
GATCCCCGGG ATGTGCGTAT GACCATGCAC TATATTGTTA CGGTGCTGGA TGCGGAAGGG
GAGAAGTTTG CCTATTTCGC CGGTGGCTAT GATAAATTGA CGGAAATCCG TTCTATTAAA
GGCACCTTAT ACGACGGACT GGGATTACCC ATCAAAAAGC TTAAACAGAG CGATATACAG
GATCTGAGCG GCACTGGCGG TGATCTGATG ACGGATGACC GTATTAAACG CCACGTCTTT
TATCACAACC TGTATCCGCA CACCGTGGAG TATGAGGTGG AAATCAGGTA TAATCATAGC
TATTACCTTC CAAAATGGCG TCCGCAGGAC GACGAATCCA TTGCGGTAGA GCAGAGTAAA
CTGACCGTGA TTACGCCAAA GGACTATTTA CTCCGCTATA AGGCGCTCAA TTATAAAGGC
GAACCCTTAT TGGGAAATGA CGGATCCGAC CGTACTTATA CCTGGGAGGC GAAGAACCTT
TGTGCTGTTC CGGAAGAACC TTATGCGCCA CATTGGAGCA CCCGTTCTAT ATCGGTGCTG
CTGGCTCCGG CGTCATTTGA AATGGCACAG TATAAGGGGA CGATGAATAC CTGGGAAGAA
TTCGGGAAAT TCTCCTATAT ACTGAATCAG GGAAGAGACG TACTGCCGGA TAATATAAAG
CAGACCGTAC ATCAGCTGAC GGATGGTCTA GCCCGCGAGC AAAAGATCTC GAAGCTCTAT
GAATATCTGC AACAGCATAC CCGTTATATC AGTGTACAAT TGGGTATAGG CGGCTGGCAG
ACTTTCGATG CTGCTTATGT GGCCTCCAAA GGGTATGGCG ACTGTAAGGC ACTTTCCAAT
TATATGTGTG CAATGCTGAA GGAAGCGGGT GTTAAAGCCT CCTGTGTGCT GGTATATGCC
GGGGAAGACA GGAATGATGT AACACTGGCA GATTTTCCTT CGCCCAGTTT CAATCACGTA
ATCGTATGCG TACCCGATAC AAAAGATACG ACATGGCTGG AATGCACCAG CAGTACAGTG
CCTCTGGGCT ATATGGGAGA ATTTACCGGT AACAGGTCTG TGCTGATCGT AGACGAAAAC
GGGGGGAAAC TGGTACGTAC ACCTGTCTAT TCTATGGAGC AGAATGTACA GACACGTAAT
ATCGTCGCTA AAGTGGAGGA ATCCGGCGAA ATGAGTGTCA GGGCTAATAG CCGTTATAGC
GCATTACAGA CGGATGACCT GCATTCAGCA CTGAACAGCC TTACCAAAGA GAAACTGATG
GAGGCGCTGA AACAAGTGGG CTTTTTCCCC AGTTACGAGG TGAAAAGTTA TGACTGGAAG
GAAACTAAGT CTGTGTTGCC ATATATTGAC GAGCGGATCG AAATTACTGC CCGTAACTAT
GCTACGATCA CGGGTAAACG CATGTTCATC GAGCCTAACC TGATGAACAA GACTTCAAAG
CGATTATCTG TTGATTCCGT ACGCAGGGCA GACATCTACC TGAGTCATTC CTATCGTGAT
ATCGATACCG TAAAGATCAC TATTCCGGAG GGTTATACAC CTGAAGCGAT GCCTCAGCCA
ATGACCTTAG AGAGTCCTTT CGGGGTTTAT TCTTCAAAAG TGAGTATCGA AGGGAATGTG
ATCACTTATA TCCGTTCTAT TGATCATAAA GGAGGTACTT ACCCTGCCAG TTCCTATGGG
GAGCTGGCAA AGTTCTATAA TAGTATGTAT AAAGCAGACA GGAGCAGGAT CGTTCTCGTC
AAAAAGTGA
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| Protein sequence | MFSFLTKKYA SAVCYCVCVL LSIGPAFAGD PIYPAMLIPD SLKKNAHAVT RLEEVTVKVN
DPRDVRMTMH YIVTVLDAEG EKFAYFAGGY DKLTEIRSIK GTLYDGLGLP IKKLKQSDIQ
DLSGTGGDLM TDDRIKRHVF YHNLYPHTVE YEVEIRYNHS YYLPKWRPQD DESIAVEQSK
LTVITPKDYL LRYKALNYKG EPLLGNDGSD RTYTWEAKNL CAVPEEPYAP HWSTRSISVL
LAPASFEMAQ YKGTMNTWEE FGKFSYILNQ GRDVLPDNIK QTVHQLTDGL AREQKISKLY
EYLQQHTRYI SVQLGIGGWQ TFDAAYVASK GYGDCKALSN YMCAMLKEAG VKASCVLVYA
GEDRNDVTLA DFPSPSFNHV IVCVPDTKDT TWLECTSSTV PLGYMGEFTG NRSVLIVDEN
GGKLVRTPVY SMEQNVQTRN IVAKVEESGE MSVRANSRYS ALQTDDLHSA LNSLTKEKLM
EALKQVGFFP SYEVKSYDWK ETKSVLPYID ERIEITARNY ATITGKRMFI EPNLMNKTSK
RLSVDSVRRA DIYLSHSYRD IDTVKITIPE GYTPEAMPQP MTLESPFGVY SSKVSIEGNV
ITYIRSIDHK GGTYPASSYG ELAKFYNSMY KADRSRIVLV KK
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