| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3809 |
|---|
| Symbol | |
|---|
| ID | 8359981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4792419 |
|---|
| End bp | 4793828 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965982 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003123472 |
|---|
| Protein GI | 256422819 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00323854 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA CAGTCATTAA AAGCATTACA GCGAAATACT TTTTATATAT ATTCTTAGCG
GCTGTTTGTG TGACAGCCTG CTCAAAAATG CTGGACGTAC CCGTACCTGA TAACAAGACG
ATCGGGAAAC AGGTATTTGC TAATAAGGAT TCTGCGGCGG CAGCGGTATC CGGTATTTAT
TCAGTACTTT CCTTGTCTAC GAATCTGATA TCCGGCGCTA CCAGCGTTTA TACAGGGGTG
TATTGTGATG AACTGGTCTA TACGGCCGCA CAACCTTCCA TCGTTGAATT CTATAACGCA
GCCCTGTCTG CAGATAATAC CACCGTCCGG GAGTTTTTCT GGAACGCGGC TTACCGCTAT
ATCTACAGTG TGAATGCCTG TATAGAAGGC TTGGAGGGCA GTAAAGATAT ACCTGCTGCG
CTGAAGAATC AGTTGCTGGG AGAGTGTCAC TTCCTCCGGG CACTGATCTA CTTCCATCTG
ACCAATTGTT TTGGCGCCGT TCCTCTTGTG AAACTGACAT CCTACCTGGA AAACGAACGG
ATGCCCAGGA CGCCCGTCAC CACCGTAGAA GGTTTTATAG AAAGCGAGCT GGTTACTGCC
AAAACATTGT TGGCTACGGC ATATCCATCG ACAGACAGGG CCCGGGCTAA TAAGTGGTCG
GCAGGCGCAT TGCTGGCAAC CTATTACCTG CACAGGAAAC AATGGGCTGC GGCAGAGCGG
GAAGCGACAG ATGTGATCAA CGCGGGTTAT TACAGACTGG AACCCTTGAA TAATGTATTC
CTGGCAGTTA GTAATGAAGC TATTTTCCAG TTACAGCCGG TATTGACAGG ATATAATACC
ATGGAGGGAA ACTGGTTGAT CCCTGCGGGA GCTGCCCGGC CAAGTTTTGC ATTGACGGAT
TCGCTGCTGG CTGCATTTGA ACCGGGTGAT AAACGGCTGA CAGAATGGGT GCGAAGCAAA
ACAGTATCAG GGAGAGCTTA TTATTATCCT TTTAAGTATA GAAAAAGGAG TGATTTTTCA
CCTGGGTTTG TTCCGACAGA ATATACGACG GTGTTGAGAC TTGCAGAAAT GTATCTTTTA
AGGGCAGAAT GTCGTTTAGC ATTGGGACAA CTACCTGGCG CAATAGAAGA CATCGATATG
GTACGCAGAA GGGCGGAATT GCCATTGATT GAACAGACTG ACCCCGAGAT TACAGCGGAA
GAACTTTCAA TAAAGATCAT GCATGAGCGA AGAATAGAGC TGTTTGGTGA ATGGGGGCAT
CGCTGGTATG ATCTCAGGAG AAGCGGAAAG GTAAATGAGG TGATGAAGGC TATAAAAACA
CGTTGGCAGG ATACAGATAC ACTATGGCCC ATTCCTGCTT CGCAGATATT GCTTAATCCG
GCATTGGAAC AAAATCCGGG ATATAAGTGA
|
|---|
| Protein sequence | MKRTVIKSIT AKYFLYIFLA AVCVTACSKM LDVPVPDNKT IGKQVFANKD SAAAAVSGIY
SVLSLSTNLI SGATSVYTGV YCDELVYTAA QPSIVEFYNA ALSADNTTVR EFFWNAAYRY
IYSVNACIEG LEGSKDIPAA LKNQLLGECH FLRALIYFHL TNCFGAVPLV KLTSYLENER
MPRTPVTTVE GFIESELVTA KTLLATAYPS TDRARANKWS AGALLATYYL HRKQWAAAER
EATDVINAGY YRLEPLNNVF LAVSNEAIFQ LQPVLTGYNT MEGNWLIPAG AARPSFALTD
SLLAAFEPGD KRLTEWVRSK TVSGRAYYYP FKYRKRSDFS PGFVPTEYTT VLRLAEMYLL
RAECRLALGQ LPGAIEDIDM VRRRAELPLI EQTDPEITAE ELSIKIMHER RIELFGEWGH
RWYDLRRSGK VNEVMKAIKT RWQDTDTLWP IPASQILLNP ALEQNPGYK
|
|---|
| |