Gene Cpin_3716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3716 
Symbol 
ID8359884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4668879 
End bp4670081 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content45% 
IMG OID644965885 
Productglycosyl transferase group 1 
Protein accessionYP_003123379 
Protein GI256422726 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0438] Glycosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.668211 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0620959 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCACTTA TCAGGAATCG GGATATAGTT ATCATTGGAT TACAACAGTG GTATACCCCA 
ATAGGAAGTA ATTGTAAGAA TATAGCTTTG CAATTTGCGC GCCATAACCG CGTGTTATAT
GTAAACACTC CACTCGACAG AAATACCATC CTGCAACAGA AGGATGATCC CAACGTCGCT
TATCACCTTA AGACTATACA GAAAAAAGAG CCTTCGATCG TACCTGTACG GGAAAATCTA
TGGAGCTATT ATCCTTCTGC AGTCCTTGAA TCGATCAACT GGTTACCGGC GCCTGCCTCG
CCTGTCTTCT CCTGGTTAAA CAAACGGAAC AACAGGAAGT TTGCAGCGAG CATTAAAGAA
GCGATGGATG AACTGGGGTT CAAAGATGTT ATCCTCTTCA ATGATAACGA TATTTTCCGT
GGTTTTTACA TGAAAGAGCT GCTGAAACCT GCTACTTACA TCTACTACAG CAGGGACTAC
CTGCTGGGCG TGGATTACTG GAAGAAGCAC GGCGAAAAGA TCGAACCTTT GCATATTGCC
AAGGCGGATG TAGCGGTAGC GAACTCTAAT TACCTCGCAG ATATTCTTAA AAAATATAAT
CCGAACAGTT ATTACGTCGG ACAGGGCTGC GACCTAAGTC TGTTTGACGT CACGCAGGGA
TATGCCATTC CCGAAGATGT GAAGGGCATT AAAGGCCCTG TTATTGGCTA TGTAGGCGCC
CTGAATGCCC ACAGGTTAGA CCCGGGTATT ATTGAACATA TTGCACGGGA AAAGAAGGAC
TGGTCGATTG TACTGGTAGG TCCGGAAGAC GAGACTTTCC AGAAATCTGT GTTGCACGAG
CTCCCCAACG TACACTTCCT TGGCAGAAAA GAACTGAAAG AACTACCGGC CTATATTAAG
GCATTTGATA TATGTATCAA TCCACAGCAG GTGAATGTAC TGACTGTCGG CAATTATCCG
TTAAAAATAG ACGAATACCT GGCTTTAGGA AAGCCGGTTG TGGCCACAGC CACCAGAACG
ATGGAATTCT TCGATTCTCA CACTTATCTT GCCCGGAATG CAAATGAGTA TGTTACGCTG
ATCAGTAAGG CCCTGGCAGA AGACAATATG ACGCTGCAGG AACAACGGAT CGCCTTTGCC
AGATCCCATA GCTGGGAAAA CTCCGTAACT GCTATTTATG AGGCAATATT AAATACCGCT
TGA
 
Protein sequence
MSLIRNRDIV IIGLQQWYTP IGSNCKNIAL QFARHNRVLY VNTPLDRNTI LQQKDDPNVA 
YHLKTIQKKE PSIVPVRENL WSYYPSAVLE SINWLPAPAS PVFSWLNKRN NRKFAASIKE
AMDELGFKDV ILFNDNDIFR GFYMKELLKP ATYIYYSRDY LLGVDYWKKH GEKIEPLHIA
KADVAVANSN YLADILKKYN PNSYYVGQGC DLSLFDVTQG YAIPEDVKGI KGPVIGYVGA
LNAHRLDPGI IEHIAREKKD WSIVLVGPED ETFQKSVLHE LPNVHFLGRK ELKELPAYIK
AFDICINPQQ VNVLTVGNYP LKIDEYLALG KPVVATATRT MEFFDSHTYL ARNANEYVTL
ISKALAEDNM TLQEQRIAFA RSHSWENSVT AIYEAILNTA