| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3683 |
|---|
| Symbol | |
|---|
| ID | 8359851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4620171 |
|---|
| End bp | 4620986 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965852 |
|---|
| Product | 3-methyl-2-oxobutanoatehydroxymethyltransferase |
|---|
| Protein accession | YP_003123346 |
|---|
| Protein GI | 256422693 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.32426 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.141975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACGC ACAAAGAAGT TAAACGGATC ACAACGCACA TATTACAGAA AATGAAAAAT
GATGGAGAGA AGATCTCCAT GCTGACAGCT TATGATTATT CCATGGCGCG CATCTTTGAC
GATGCCGGTA TGGACATCCT GCTGGTAGGC GATTCTGCCG CCAACGTAAT GGCCGGTTAT
GAAACCACTC TCCCTATCAC ACTGGACCAC ATGATCTATC ATGCAGCTTC TGTAGTAAGA
GGAATCAAGC GGAGTTTTGT TGTCGTAGAC CTGCCTTTCG GCACTTACCA GGGCAATTCT
AAAGAAGCCC TTGCCTCTAC CGTGCGTATT ATGAAGGAAA CCAGCGCACA TGGTATCAAG
ATCGAAGGCG GTGAAGAAAT CATCGAATCA GTAAAACGTA TCATTTCTGC GGGTGTACCG
GTAATGGGCC ACCTCGGACT GACACCTCAA TCCATCAATA AATTCGGCAC TTACAGCGTA
AGGGCTACCG AAGAAGCGGA AGCGCAGAAA CTCCTGAAAG ACGCCCTCCT TTTACAGGAA
GCAGGCTGTT TTGCCCTGGT ACTGGAAAAG ATCCCCGCTA TGCTGGCAAA ACAGGTGGCT
GAAAGCCTCC AGATTCCGGT TATCGGTATC GGCGCCGGCA AACACGTAGA CGGTCAGGTA
CTGGTCATGC ACGATATGTT AGGTATCAAC AAAGATTTTA AACCCCGCTT CCTGCGCCGT
TATCTCAATT TATATGACGA AATTTACAAG GCGTCACAGC AATATATCCA CGACGTGAAA
GCAAAAGACT TTCCGAACGA TAACGAACAA TACTAA
|
|---|
| Protein sequence | MSTHKEVKRI TTHILQKMKN DGEKISMLTA YDYSMARIFD DAGMDILLVG DSAANVMAGY
ETTLPITLDH MIYHAASVVR GIKRSFVVVD LPFGTYQGNS KEALASTVRI MKETSAHGIK
IEGGEEIIES VKRIISAGVP VMGHLGLTPQ SINKFGTYSV RATEEAEAQK LLKDALLLQE
AGCFALVLEK IPAMLAKQVA ESLQIPVIGI GAGKHVDGQV LVMHDMLGIN KDFKPRFLRR
YLNLYDEIYK ASQQYIHDVK AKDFPNDNEQ Y
|
|---|
| |