| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3620 |
|---|
| Symbol | |
|---|
| ID | 8359787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4514539 |
|---|
| End bp | 4515888 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965789 |
|---|
| Product | two component, sigma54 specific, transcriptional regulator, Fis family |
|---|
| Protein accession | YP_003123283 |
|---|
| Protein GI | 256422630 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.351229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00000838354 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGAA CTGTCCTTAT AATAGATGAT GAAGAGAAAC TGCGCAGTCT GACCAAAAGG
ATTATCGCAC TGGAAGGTTT TAACGTACTC GAAGCCGGTA ATATCAAAAG TGCCCAGAAA
ATAATCGAAA AAGAAGAAAT AGACGTTGTA CTCTGTGACG TAAAACTACC GGATGGTAGC
GGCGTAGACT ATGCCAGAAC GATCAAGGAG AAAAATCCAT CTATAGAAAT CATACTGCTT
ACTGCATACG GTAATATACC CGATGGCGTT CAGGCTATCA AAAACGGCGC CTTCGACTAC
CTCACCAAAG GAGATGACAA CAACCGTATT ATTCCATTGC TTAACAGAGC TTTGGAAAAA
GTACAGCTGC AGAAACGTAT CGAAAAACTG GAAAGCCAGG TCGGCAAAAA ATACAGCTTT
GACACCATCC TGGGTACCTC CCGCCCTATC CGGGATGCCA TAGAGCAAGC CAGTAAGGTA
GCCCCGGCTG ATACCACCGT GTTACTCCTG GGTGAAACGG GTACCGGCAA GGAAGTGTTT
GCACAGGCCA TTCATAATAA CAGTAAACGT AACGGTAAGC CGTTCGTCGC CCTGAACTGC
AGTGCGTTCA GTCGTGAATT ACTGGAAAGC GAACTGTTTG GCTATAAAGC AGGCGCTTTT
ACCAATGCCA ACCGTGATAA AAAAGGCTTG ATCGAAGAGG CTAATACCGG TACTATCTTC
CTGGACGAAA TCGGAGAAAT GCCCCTGGAC CTCCAGAGTA AATTACTCCG GGTACTGGAA
ACCGGCGAAT TCATCAAAGT AGGCGATACA AAGCCCACTA AAGTAAATGT GAGGATAATT
GCGGCAACCA ACCGCGACCT CAAGGAAGAG TCTCAAAAGG GCCATTTCCG CGAAGATCTG
TACTACCGTC TGAACGTATT CGCTATCACC CTTCCTCCAC TCCGGGAACG TAAAAAGGAT
ATCCCCCAGT TGGCAGAGTA CTTTGTTGGG ATTTTCTCTG CTAAAATCAA TCAGCGGAAG
CAGAAAGTCA CCCCTGCTTT TATCGAAAAG CTCCAGTTGC ATGAATGGAA AGGGAATATC
CGCGAACTCA AAAATGTGCT GGAAAGGGCC GTTATTATGG CCGGTGGAGA CGATCTGGCA
GTCGAACACC TGCCTCTGGA CCTCCAGATA GCCGATAAAG CCAGTACACC ACTCTCCGCT
TTCGATTTAG CCAGTGTCGA AAAACTACAC ATTATCAGGG TCTTATACCA TACTAAAAAC
AATAAAACGG AGGCTGCCCG TCTGCTGAAT ATCGGCCTGG CCACTCTTTA TCGTAAGATA
GAGGAATACG GACTCAATCA CCAGCAATAA
|
|---|
| Protein sequence | MPGTVLIIDD EEKLRSLTKR IIALEGFNVL EAGNIKSAQK IIEKEEIDVV LCDVKLPDGS
GVDYARTIKE KNPSIEIILL TAYGNIPDGV QAIKNGAFDY LTKGDDNNRI IPLLNRALEK
VQLQKRIEKL ESQVGKKYSF DTILGTSRPI RDAIEQASKV APADTTVLLL GETGTGKEVF
AQAIHNNSKR NGKPFVALNC SAFSRELLES ELFGYKAGAF TNANRDKKGL IEEANTGTIF
LDEIGEMPLD LQSKLLRVLE TGEFIKVGDT KPTKVNVRII AATNRDLKEE SQKGHFREDL
YYRLNVFAIT LPPLRERKKD IPQLAEYFVG IFSAKINQRK QKVTPAFIEK LQLHEWKGNI
RELKNVLERA VIMAGGDDLA VEHLPLDLQI ADKASTPLSA FDLASVEKLH IIRVLYHTKN
NKTEAARLLN IGLATLYRKI EEYGLNHQQ
|
|---|
| |