| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3577 |
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| Symbol | |
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| ID | 8359744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 4458049 |
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| End bp | 4459467 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644965747 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003123241 |
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| Protein GI | 256422588 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000202901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0451617 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAC AGATAAATAA ATATTTCTTA ATAGGTTTGT TGAGTGCCGG CCTACTGGAG
GCATGTAAAG TGTCGAAGGA TACGCCGGCG CCTCAACCCG AGTTACCTGT TGCATTCAGA
AACAGTGCAA CAGCTGATTC CACCACCATC GCAGATCTTC CATGGGAGAA CTTCTTTACA
GATGCCACCC TGAAAACGCT GATCGATAAC GCTATCAAAA AGAATTATGA TATGCAGGCG
GCCATCCTGA GTGTGGAGGC AGCCAGATTG CAAATGAGAC AGGCAAAACT GCTGAATCTC
CCATCTGCAA AACTGAATGT TGTCGCCAGC ACCAGCCGTC CTTCTGATAA CAGTTTGAAT
GGTATCAGTC TGAGTCAGTT CCTGGGTACC CAACACCTGG AAGACTACAG CGCTAATATC
CAGTTTGCCT GGGAAGCTGA CATCTGGGGT AAGATCAAAA ATCAGAAGAA AGAAGCATTA
GCCGCTTACC TGCAAACAGA AGAATCCCGT AAGCTGTTGC AAACAGATAT CGTAGCTACC
GTATCAAAGG CATTCTATAA CCTGCTGATG CTGGATGAAC AGCTGGCAGT AGCGCAGAAT
AACCTGAAAC TGAACGATAG CACCCTGCGC ATAATCCGCT TACAGTATGA CGCCGGACAG
GTCACCCTGG TGGCAGTACA ACAGGCGGAA GCGCAACAGC TCACAGCTGC ACAGCTGATC
CCGCAGATCG AACAGGACAT GACCGTACAG GAAAATGCCC TCCGTATCCT GTCAGGAGAA
TTGCCTGCAG CAATAGAAAG ACACACCAAA CTGAATGAAT ATCCATTGAC AGATAAGCTG
TCTGCCGGTA TTCCTTCTGA TCTGCTGAGC CGTCGCCCGG ATGTAAAAAG CAGCGAACTG
GCCCTGAACA TTGCGAACGC AAGGGTAGGT GTAGCGAAGG CAAATATGTA TCCATCCCTG
GTTATTACAG CCAGCGGTGG TCTGAATGCC GTAAAGTTCA GCGACTGGTT TCAGGTACCA
ACTTCTCTCT TCGGACTGGC AACAGGCGCC ATCGCGCAAC CTTTGTTTGA CCGTAAAAAT
CTGAAAACAC AATTTGAAGT GGCTAAGATA CAGAGAGAGC AATCCGTGCT CCGTTTCCGT
CAGAACGTAC TGGAAGCGAC CGGAGAGGTG GCAGATGCAC TGGTGAAAAT AGAAAAGCTT
AAATCGCAAT ATGACATCGC TTCTACCAAG GTGCAGACAC TCCATCAGGC TGTCAACAAT
GCCAGCCAGC TGTTTGAAAG TGGCCGCGCC AGTTACCTGG AAGTGATCAT CGCGCAAAGT
AATGTACTGC AGAGTGAACT GGAAGTCAGC AATCTCAGAA GAGATCAGCT GTACGCTGTA
GTAGATCTTT ACCGTTCCCT CGGGGGCGGT TGGCGATAG
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| Protein sequence | MKAQINKYFL IGLLSAGLLE ACKVSKDTPA PQPELPVAFR NSATADSTTI ADLPWENFFT
DATLKTLIDN AIKKNYDMQA AILSVEAARL QMRQAKLLNL PSAKLNVVAS TSRPSDNSLN
GISLSQFLGT QHLEDYSANI QFAWEADIWG KIKNQKKEAL AAYLQTEESR KLLQTDIVAT
VSKAFYNLLM LDEQLAVAQN NLKLNDSTLR IIRLQYDAGQ VTLVAVQQAE AQQLTAAQLI
PQIEQDMTVQ ENALRILSGE LPAAIERHTK LNEYPLTDKL SAGIPSDLLS RRPDVKSSEL
ALNIANARVG VAKANMYPSL VITASGGLNA VKFSDWFQVP TSLFGLATGA IAQPLFDRKN
LKTQFEVAKI QREQSVLRFR QNVLEATGEV ADALVKIEKL KSQYDIASTK VQTLHQAVNN
ASQLFESGRA SYLEVIIAQS NVLQSELEVS NLRRDQLYAV VDLYRSLGGG WR
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