| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3553 |
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| Symbol | |
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| ID | 8359720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 4427541 |
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| End bp | 4430786 |
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| Gene Length | 3246 bp |
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| Protein Length | 1081 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644965724 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003123218 |
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| Protein GI | 256422565 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.467854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00228984 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCATCGGA TCCTGATGCT TGTTTTCCTA TTGGCTGTCT GTAGCAGGCT ATCGGCACAG
CAGCCCCTGG AAAAGGTACT GACCTTCAAA GGCAGCACCA TCACCGTACA GCAGTTCATT
CAACAGGTAA AAAGCCAGCA ACAGCTGCAG TTTACCTTTG ATGAAGATGT GAATGCCCTG
TTGTCCCGCA CAGTGCATAT CCGTAGAAAC ACCGTCTCAT TAAAAGAAGC CCTCGACTGG
CTGGCCACAG ACGCTTCCAT CCATTGCCGC ATCCTCAATA ATTATGCGAT CCTCAGCGTG
ATGCCTGCCC ATCAGAAAAC GCCTGCTGCC AAGCCCGATC CGGCCTCCCT GGAACTGCCA
CAGCCATCTA CAAAGGCGCT GGGAGAAGTG GTGGTGACCG CCCTGGGTAT CAAAAAAAGC
GAACGTAACC TGGGTTATTC CGTAGCACAG CTGTCTTCCA AGGATGTCAG CGATGTCCCA
CAACCCAATG TACTGAACAG CCTCGCTGCC CGCGTTCCGG GTGTAAATAT CCGCAGTACG
GGTTCCGATC CGGGCTCCAG CGTGATGGTA ACGATCCGCG GACAATCCTC CATCAGCAAA
GACAATCAGC CCCTGTATGT GGTAGACGGT GTACCGGTTG CTCCTGCTAT CCAGAATCCG
GCACAGGCGG TAGATGGCAA ACAGACCATC GATTATGGTA GTCCGATCAG TGATATCAGC
GCTGACGATA TCGCCAGTAT CACCGTATTA AAAGGCGCCA GTGCTGCTGC CCTTTATGGT
AGCCGCGCAG GATCAGGTGT TATCCTCATC ACTACTAAAT CCGGTGCTGC AAAAAAAGGA
TTGGGAGTCA GTTTTAATTC CAGCGCCGTA TTCGACAAAG CCTGGATGTT CCCGCATTTC
CAGCATGAAT ATGGTTCCGG TGACTGGACA GGCAGCGACA ATACCATCAG CACCGGCGCA
TGGGGTCCGA AACTGAATAC CGGTCGTAAG CTGGTACAGT GGAACAGTCC ACTGGATGAA
AATGGCGATC CTTTGCCGCT CGACTGGGTA GCTTATCCTG ACCGTATAAA AGATTTCTTC
CGTACCGGAC ATACCTTTAC CAATAATATC GCGGTATCCA AAAGTGGAGA TGCCGGCAAT
TTCAGACTGT CCTACGGCAA TCTGCAGAAC CGGGGTATCG TACCGAATAC CGACCTGAAA
CGTGATAACC TGACCTTCTC AGGCACCTAT CACCTTAATA AATCCATCCA CCTCAGTACT
AACCTCGCTT ATACCAATAA CCGTAGTGCC AACCGTCCTT CTGCTTATAC AGAAAGCGTG
ACCATGCAGG TCTATAAACT GACGCCCAAC GTCAATATTC ATGCCCTGCG TAACTACTGG
ATACCTGGTA AAGAAGGACT GCAACAATAC AATCCTTACA GCACGGATGA CAACCCTTAC
CTGATCGCAT ACGAAGAAAC CAACAGTTAC ACCCGTAACC GCATGACGGG CAACGTACAG
GCTTCTTTCG ATATCAGACC TGATCTGACA CTGATGCTGC GTACCGGCCT CGATTACTAT
GCACTGAGCG AAGACCAGCG CAGACCATTC AGCGCCAAAA GAAATCCTAA AGGGGCTTAT
GTGCTGGAGA ATGACAACTT CAAAGAGCAG AACAGTGATT TCCTCCTGAC CTATAAACCC
AACCTGAAGA GCGATTTCAA AGTATCTGTT GCTGTCGGCG GTAACCGTAT GGACCAGGAA
AGTTCCTCCA ATCAGCAGTC TACCGGAAGT CTGACACTCC CAGGTGTATA CAATCTGTCT
AACGCAGCAG CGGGCGCGCT GGTCAATACA CAGTCCTTCC GTAAAAAGCG TATCAACAGC
TTATACGGTA TCGGTGAGGT AAGTTATCAT AACTACCTTT TCCTGAACCT GACGGCCCGT
AATGACTGGA GCAGCACCCT GCCCAAAGAG AACAATTCCT ACTTCTACCC TTCCGTATCC
CTGAGTGCGA TTCTCTCTGA TATGCTGAAT ATCAAATGGC AGGACCTGTC TTACCTGAAA
CTACGTGCCA ACTGGTCACA GGTAGGTGCT GATACCGATC CATATCAGCT GTACAACACC
GTACCATTTG ATACCGACTG GGGTAGTGTA AAACGTGCGA CCATCAGTTT CAATCAGAAA
AACAGTCTGC TGAAACCGGA GATCGCTACT TCTTATGAAG CCGGTGTAGA TGCAAGTTTC
TTTAAAGACC GTGTAGGTTT TAATATCACC TGGTATAAAA CCAACAACCG CAACCAGATC
ATCCAGGTAC CTACGACGAT TGCTTCCGGC GCCAGTACGA TGCTGATCAA TGCCGGTAAT
ATCCAGAACA GCGGATGGGA AATTGGTCTG AACCTGGTAC CTGTCAAAAG CACTGCTTTT
ACCTGGAAAT CTGATATCAA CTTCACCCGC AACGTCAATA AAGTCATCGA ACTGACACCA
GCGGTGACCA GTTATATGCT GGGCAGCACA GATGGCAGTA ACATCGAATA CCTGATCAAA
GAGGGGACTA AAATGGGCGA TTTCTATACA AGGAGCTGGG TGAAAGTGAA AGAAGGGGCT
TACGCCGGAC AAGCACTTCT GAACAGCAAC GGACTGCAGC AACAGGATGC TGATTTTGTA
AAGATCGGTA ACTACAATCC GGATTTTATG GTGGGTTTCA ACAACAATTT CCGCTACAAA
AACCTGAGCT GCAATTTCCT GATCGACTGG CGCAAAGGCG GTTCTTACTA TTCCTATGTC
GCGAAAAGCC TGATCCAGGA TGGTCGTACA ACCAATACAT TACGCGGCCG TGATGCGGCA
CATGGCGGTC TTACCTGGAC CGATGCCAAT GGTACTGTAC GCGATGACGG AATGATCATG
GAAGGTGTGA TCGCTAATGG CGACGGTACT TACAAACCGA ATGACGTCAT CATTGATGCG
GCTACCTATT ATGACAATAA ATACTGGAAG TATTACGAAA ACGAAACCTA CAGCGCTACT
TATGTAAAGC TGAAAGAAGT ATCGCTCACT TATGCATTCG GTCGTAGTGT AATGCAGCGT
ATCCCTTTCC TGAGCAACCT GTCCCTGTCC CTGATCGGTA ACAATCTTTA CACCTGGGCA
GCAGCAAAGA ACGGCTATGA TCCTGAGATC ACCATGAGCC TTTCCAACCA GCGTTACCAG
GGTGTTGGTC ACTGGACATT ACCAGGTACC CGCTCGTACG GTGCTAAACT CAGTTGCAAC
TTCTAA
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| Protein sequence | MHRILMLVFL LAVCSRLSAQ QPLEKVLTFK GSTITVQQFI QQVKSQQQLQ FTFDEDVNAL
LSRTVHIRRN TVSLKEALDW LATDASIHCR ILNNYAILSV MPAHQKTPAA KPDPASLELP
QPSTKALGEV VVTALGIKKS ERNLGYSVAQ LSSKDVSDVP QPNVLNSLAA RVPGVNIRST
GSDPGSSVMV TIRGQSSISK DNQPLYVVDG VPVAPAIQNP AQAVDGKQTI DYGSPISDIS
ADDIASITVL KGASAAALYG SRAGSGVILI TTKSGAAKKG LGVSFNSSAV FDKAWMFPHF
QHEYGSGDWT GSDNTISTGA WGPKLNTGRK LVQWNSPLDE NGDPLPLDWV AYPDRIKDFF
RTGHTFTNNI AVSKSGDAGN FRLSYGNLQN RGIVPNTDLK RDNLTFSGTY HLNKSIHLST
NLAYTNNRSA NRPSAYTESV TMQVYKLTPN VNIHALRNYW IPGKEGLQQY NPYSTDDNPY
LIAYEETNSY TRNRMTGNVQ ASFDIRPDLT LMLRTGLDYY ALSEDQRRPF SAKRNPKGAY
VLENDNFKEQ NSDFLLTYKP NLKSDFKVSV AVGGNRMDQE SSSNQQSTGS LTLPGVYNLS
NAAAGALVNT QSFRKKRINS LYGIGEVSYH NYLFLNLTAR NDWSSTLPKE NNSYFYPSVS
LSAILSDMLN IKWQDLSYLK LRANWSQVGA DTDPYQLYNT VPFDTDWGSV KRATISFNQK
NSLLKPEIAT SYEAGVDASF FKDRVGFNIT WYKTNNRNQI IQVPTTIASG ASTMLINAGN
IQNSGWEIGL NLVPVKSTAF TWKSDINFTR NVNKVIELTP AVTSYMLGST DGSNIEYLIK
EGTKMGDFYT RSWVKVKEGA YAGQALLNSN GLQQQDADFV KIGNYNPDFM VGFNNNFRYK
NLSCNFLIDW RKGGSYYSYV AKSLIQDGRT TNTLRGRDAA HGGLTWTDAN GTVRDDGMIM
EGVIANGDGT YKPNDVIIDA ATYYDNKYWK YYENETYSAT YVKLKEVSLT YAFGRSVMQR
IPFLSNLSLS LIGNNLYTWA AAKNGYDPEI TMSLSNQRYQ GVGHWTLPGT RSYGAKLSCN
F
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