Gene Cpin_3547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3547 
Symbol 
ID8359714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4420000 
End bp4421433 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content51% 
IMG OID644965718 
Producttranscriptional regulator, GntR family with aminotransferase domain 
Protein accessionYP_003123212 
Protein GI256422559 
COG category[E] Amino acid transport and metabolism
[K] Transcription 
COG ID[COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.224357 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0204741 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGATA CAATGTTGCT TCATATAGAC AGGCAGTCGT CACAGGCGGT GTATGTACAG 
CTGGCCAACG GACTGATAAA CCTGATCAGG AGCGGGATAC TGAAACCGGG TACCCGTTTA
CCCTCAATCC GGGTCATGGC AGCTGAACTG CAGATCCATG CCAGGACAGT GGTAGCCGCT
TATGATGAAA TGGCGGCCCA GGACTGGATC TATAGCAAAC CCCGGTCGGG TATGGTCGTG
GCGGAGAATC TGCCTGATCT GAAGCCCCGT ACATTCCGGA CCAGTTTACC GGCAGCAGCA
GATAAGTCAG CGGCAGGCGC CGATCCGCAG CAACAATTCC GCTATGTGAT CAACGACGGG
TTTCCGGATC ACCGGATTGC CCCGGTCGAA CAGCTGATCA AGCTCCAGCG CCAGGCTTTC
TATAACGATG ATGTGGAGCG TACTTCCATG TATTCAGATA GCCGGGGGAG CTTCAGACTC
AGGAAAACAC TGGCGGAACA TATCAGCGGC TCCAGAGGAA TCGCTATGAC GCCGGATATG
TTATTACTGA CACGTGGTGC ACAGATGGCG ATTTATGTGG TAGCAGCGGC CCTGATTAAA
CCAGGAGACG AGGTGTTGGT AGGGGATCCG GGGTACCGAC TGGCAACAGC CGTATTTGAG
CAATTAGGGG CCAGAATAAC CCGTATTCCG GTGGATGATG AAGGCATTGA CGTTGACCAG
ATCGAAATGG CCTGTAAGAG GAAATTCAGA CTGTTATATA TCGTTCCGCA TCATCATCAC
CCGACGACGG TCACATTGAG TGCGGCCAGG AGAATGAAAC TGTTGTCGCT GATCAGAAAA
CACCGGTTTT ATACCATTGA AGATGACTAT GATTACGAGT TCCATTATGT CCACCGGCCG
ATATTGCCAC TGGCCAGCGC GGAGCATGAC GGTCATGTGT TATATATAGG TTCAGTCACC
AAAAACCTGG CAGCCTCCAT GCGCCTGGGA TATTTGATTG CAGGAGAGGA TTTTGTCAGC
CGGGCGGCCC AAATCAAAAA AGTGATAGAT CTCCGGGGAG ACCTCTTGTT TGAAGATGCC
CTGGCGGTCT TGTTTGAGGA AGGCATCATA CAAAGGCATA TCCGTAAATC CCTGAAATTG
TATCAGCAGC GAAGAGATCT TTTCTGCGGA TTACTGGAAA AGGAGCTGGG GGACTATGTC
CGCTTCCGGA AGCCAGATGG CGGGATGGCG GTGTGGGTAC AGTTTGACGG TAGGTTTAAG
CTGTCTGTGA TCGCTGCCAG AGCGGGGGAG CAGGGATTAA AAATGTCTGA CGGTACGGCT
TATGACCCGG TAGCCGAAAG GCTGAATGGG CTGAGAATGG GGTTCGCTTC CCTGAACGAA
AGAGAGATGA AAAAAGTGAC GGCTATTCTA AGGAAAATAC TTGAACAATA TTAA
 
Protein sequence
MLDTMLLHID RQSSQAVYVQ LANGLINLIR SGILKPGTRL PSIRVMAAEL QIHARTVVAA 
YDEMAAQDWI YSKPRSGMVV AENLPDLKPR TFRTSLPAAA DKSAAGADPQ QQFRYVINDG
FPDHRIAPVE QLIKLQRQAF YNDDVERTSM YSDSRGSFRL RKTLAEHISG SRGIAMTPDM
LLLTRGAQMA IYVVAAALIK PGDEVLVGDP GYRLATAVFE QLGARITRIP VDDEGIDVDQ
IEMACKRKFR LLYIVPHHHH PTTVTLSAAR RMKLLSLIRK HRFYTIEDDY DYEFHYVHRP
ILPLASAEHD GHVLYIGSVT KNLAASMRLG YLIAGEDFVS RAAQIKKVID LRGDLLFEDA
LAVLFEEGII QRHIRKSLKL YQQRRDLFCG LLEKELGDYV RFRKPDGGMA VWVQFDGRFK
LSVIAARAGE QGLKMSDGTA YDPVAERLNG LRMGFASLNE REMKKVTAIL RKILEQY