Gene Cpin_3450 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3450 
Symbol 
ID8359616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4305005 
End bp4308211 
Gene Length3207 bp 
Protein Length1068 aa 
Translation table11 
GC content47% 
IMG OID644965623 
Producthypothetical protein 
Protein accessionYP_003123118 
Protein GI256422465 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0554556 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCTTT TTCTGCAAAG AATGATAAAG AATTTTGTCA TTCACACAAC CTTTATTGCC 
AGCACATTTC TTCTTCTTTT TGTCCTGACT AATGCCAGCA ACAGTTATGC GCAGTCCACA
GACGCTTCCA TCTCCGGTAA AATAACCGGT ACAGACGGAA AGGGACTCTC CGGCGTTTCT
GTTACCGTAC GCAACGAATC GACCGGTTTT CAGTCTGTTT CCATTACAAA CAAAGAAGGT
AAATACTCCT TCATCCAGTT ACCCCTTGGT AAGCCGTACA CCGTAAAAGC GGCCTTCGTC
GGTTTTGCCA CACAGATCAA AAACCAGTTG AGCGTTAACC AGGGCGATAA CCTCATCATA
GATTTTACCA TGAGCGAATC CGTGAGCAAA CTAAAAGAGA TCATCGTCAA CGCCAATACA
CTCAACAAAA GAATAGACCG ATTGGGGTCC AGTACCGCAG TCACCGCACA GAACATCCAG
CAGTTGCCGG CGCAGAACAG GAACTTCAAT AACCTGTCCG CACTGGCACC TACTACGAAT
GGTACCAATA TCAGCGGACA ACGTGCTTCT TCGACCAACT TCCTGATTGA TGGCGCCAGC
GCCAGAAACA ACCTGACTTC CGGTGCGCTG GGTAGTGGTC CTTATTCTCT GTCACTCGAA
GCGATCCGTG AGTTTGAAGT GATTACCAAC GTATATGATG TGACACAGGG CCGTCAGGGT
GGTGGCGCTG TAAGCGTGGT AACAAAATCA GGTACCAATA CACTGACCGG TAGCGTATTC
GACTACTATC GTTCTGACTT TCTTGCCAGT CCTTATGACA TCAGAGGTAA CAAACGTCAG
CAGCAGTTCA CCACCAACCA GTATGGCTTC AGCCTGGGTG GCCCCATCAT CAAAGACAAA
CTGCATTTCT TTACCGCACT GGACAGACAG GATGAAAAAC AGCCCTTCTA CATTGCCGAC
CTGAAAGATG ATAATGACAT CATCGCTAAC CGTATCAGCA GGGGTGCTCT GGATACTGTG
CTGAATATTG CCCGTACTAA ATATGGTCTG AGTAATAATC CGCAGGTAGG AGAATTCCAG
CGTAAAACAC TGGCGAATAC CTTCTTTGTA CGCCTCGACT GGCAGATCAA TGCAAAAAAC
CGCCTGACCA TCCGTAACAA CTACAGCGAC TGGAAAAACC CAAACAGCAA CAGCGATAAC
TCTAACATCA ACCTGTTTGA AGTATGGGGT AATTTCAAGT CGAGAGAAAA TAGTACACTG
GCGTCTTTAC GTACCCAGTT TACGCCTACC TTCCTGAACG AACTGAAAGT ACAGTATCAG
ACGGCTACGC GTAATTATTA TCCGAACAGC GAACTGCCTG CTGCTAATAT CCCACGTGCG
ATTGTAACCG TTCGTTCCTT ACTGCCGAAT GGTACTATGG GTAACACCAC CGTACAGCTG
GGCGGACAAC GTTTCTTTCC GGAAAGCAAC CTGGAAAACC AGATACAGCT CGTGAACACC
TCTTATCTGA CCAAAGGAAA ATACCGTTTT ACCTTCGGTA CAGATAACAC CCTGACCTAC
CTGGATACTT ATATTTCCAG CGAACAGAAC GGCCGTTTTA TCTTTAACAG TCTGCAGGAA
TTTGCGGATA TGAATCCATC CCGTTACGCC AGAGAAGTAC CTTTAAAAGG TATTCCTTCC
GTACAGCAAT GGATACTGAA TGCCTCTCTC TTCGGACAGA TGCAATTTGA GCCGGTAAAG
AACGTAGAAG CCCTCATTGG TGTAAGATGG GACCTGACCA GCTACCTGAG CCAGGCAGAT
TATAACCCGG CTGTGGAGAA AGCGTTCGGC CTACGTACTG ACAGCAAAAT TACTGATGCC
GGTAAGATCC AGCCCCGTTT GCAGTTAACC TGGGATATCA AGGGTAACAA AACCGATATC
GTGCGTGTAG GTGCAGGTTT GTTCTCCGCT TATCCGGTGA ACTATGCACA GGTAAACAAT
ATCCAGAACA GCGGTACCAT GGTGGCCTCT ATCGATGTAT CCCGTCCTGC CACTGGCACC
AGCCTGGTTC CCGTACCGGA TTTCGTTTCT TACAGGAAAG ATCCTTCTAC CGCTCCTGGT
CTGATCAATG GTGTGCCAAC TGTATCTACC ATCAACCTGA ACGATCCGAA CCTGAAAATG
CCCTCTATTT TCAAAAGCAA TATCAGCTAT AATAAGATCT TCGGCGACTG GCTGCGTGTA
GGTGTAAACT TCCTTTACTC GCATACCAGC AACAACTATG TATACCTGGA TCAGAACATA
GTAGATCAGC CTTATTTCCG TCTGGCCAAT GAGAACAACA GGGCCGTATT CGTTCCGGCG
AGCACGATCA CTGCCAACGG TACTACCAAC AACGTACTGG GCAGAAAAAC ACAGGATGTA
GGCAGAACAC TGATGCTGAC CAATGGCGCT AAACTGAGAC AGGCTGCTGT GATTGTTGAT
GCGAGTCTGC GTTACTTCAA AGATGGTTAT TTCAACGTGA GCTATACCTG GAACGATGCA
AAAGACAACT CCTCCTACAA TGGTAACGTG GCCAATACCT CTACTTTCAG AGCAGTAAAA
TCTGATCCGA GAGACCTGAC TGAAATGAAC TATTCCGATA ACCAGTTCAG ACACAAAATC
GTACTGTACG GTGCGACACC AAACTGGAAA GGATTTGTAT TTGCCGGTAC CTTCAGAGGA
TTGTCCGGTA CCCGCTTTTC TATGACAGTA GATGCAGATA TCAACGGCGA CTTCGTAGGT
GGTCCTGGTA CAGACAATGA CCTGGCCTTT GTATTCGATC CGAATAACCA CAATACACCG
GCGGATGTGA AAGCTTCTAT GGAGAAAGTG CTGAGTAACC CGGAAAACCG TGCAAAGAAA
TATATCACCC AGAGCCTGGG CAGGATAGCT GACCGTAACG GTGGATCTAA TCCTTTCTCC
GGTACTTTTG ACGTAAGACT GCAGAAAACT TTCAAAACAT TTAAAACACA GGGCTTGACC
TTTAGTGTTG ATGTGTTTAA CTTCGCTAAC CTCCTGAATA AAAACTGGGG TGTTAACTAC
AACCTGGGCG ATCAGAGCCT TTTATTCGTA ACAGGATTTG ATCAGGCTAC CAAAGAATAC
AAATACCGTG TAAACGAGAA TGTGGGCGTT ACGACAAAGA ATGGTACGCC ATACCAGGTA
CAGCTGGGCG CCCGCTATTC ATTCTAA
 
Protein sequence
MHLFLQRMIK NFVIHTTFIA STFLLLFVLT NASNSYAQST DASISGKITG TDGKGLSGVS 
VTVRNESTGF QSVSITNKEG KYSFIQLPLG KPYTVKAAFV GFATQIKNQL SVNQGDNLII
DFTMSESVSK LKEIIVNANT LNKRIDRLGS STAVTAQNIQ QLPAQNRNFN NLSALAPTTN
GTNISGQRAS STNFLIDGAS ARNNLTSGAL GSGPYSLSLE AIREFEVITN VYDVTQGRQG
GGAVSVVTKS GTNTLTGSVF DYYRSDFLAS PYDIRGNKRQ QQFTTNQYGF SLGGPIIKDK
LHFFTALDRQ DEKQPFYIAD LKDDNDIIAN RISRGALDTV LNIARTKYGL SNNPQVGEFQ
RKTLANTFFV RLDWQINAKN RLTIRNNYSD WKNPNSNSDN SNINLFEVWG NFKSRENSTL
ASLRTQFTPT FLNELKVQYQ TATRNYYPNS ELPAANIPRA IVTVRSLLPN GTMGNTTVQL
GGQRFFPESN LENQIQLVNT SYLTKGKYRF TFGTDNTLTY LDTYISSEQN GRFIFNSLQE
FADMNPSRYA REVPLKGIPS VQQWILNASL FGQMQFEPVK NVEALIGVRW DLTSYLSQAD
YNPAVEKAFG LRTDSKITDA GKIQPRLQLT WDIKGNKTDI VRVGAGLFSA YPVNYAQVNN
IQNSGTMVAS IDVSRPATGT SLVPVPDFVS YRKDPSTAPG LINGVPTVST INLNDPNLKM
PSIFKSNISY NKIFGDWLRV GVNFLYSHTS NNYVYLDQNI VDQPYFRLAN ENNRAVFVPA
STITANGTTN NVLGRKTQDV GRTLMLTNGA KLRQAAVIVD ASLRYFKDGY FNVSYTWNDA
KDNSSYNGNV ANTSTFRAVK SDPRDLTEMN YSDNQFRHKI VLYGATPNWK GFVFAGTFRG
LSGTRFSMTV DADINGDFVG GPGTDNDLAF VFDPNNHNTP ADVKASMEKV LSNPENRAKK
YITQSLGRIA DRNGGSNPFS GTFDVRLQKT FKTFKTQGLT FSVDVFNFAN LLNKNWGVNY
NLGDQSLLFV TGFDQATKEY KYRVNENVGV TTKNGTPYQV QLGARYSF