Gene Cpin_3398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3398 
Symbol 
ID8359564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4167022 
End bp4167546 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content45% 
IMG OID644965571 
ProductNusG antitermination factor 
Protein accessionYP_003123066 
Protein GI256422413 
COG category[K] Transcription 
COG ID[COG0250] Transcription antiterminator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.191132 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.539584 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAAAT TTAACGTTGG TTGGTATCTC CTTTATACAA GACCCCGGCA GGAAGCCAGA 
GTAGCTAAGG AAATGGCGGA CAAAAACATA CAGATATACC TGCCCTATAC AACAGTAACA
AGAAGATGGA CTGACAGGAT CAAAGTACTT GAAGTACCGC TCTTTCCATC CTATGTATTC
GTGCACCTCA CCAATATGCA TGAATTCTAC TACGGATCAA ACCTGGAAAG CGCCTGCAGT
TATGTACGTT TCGGTAATGA AGTAGCCCGT GTAAGTGATG CGGCTGTTGA TGCTGTAAGG
ACGATCGCTA AAGCCGGTAA TAACCTGGAA GTTTCCAGCG AACGTTTTAC CCCTGGTCAG
CAGATGATGA TTAAAGAAGG CCCGCTCTGC GGTCTGAACT GCGAAGTGAT ACAATACAAA
GGCAAAGATA AAATACTCGT ACGTGTGCAT ATGCTGCAAA GAAGCATTAT GGCAGATATG
CCGGCCAGCG TACTGATCCC GTTTCAGGAA GAACAACAAT TATAA
 
Protein sequence
MSKFNVGWYL LYTRPRQEAR VAKEMADKNI QIYLPYTTVT RRWTDRIKVL EVPLFPSYVF 
VHLTNMHEFY YGSNLESACS YVRFGNEVAR VSDAAVDAVR TIAKAGNNLE VSSERFTPGQ
QMMIKEGPLC GLNCEVIQYK GKDKILVRVH MLQRSIMADM PASVLIPFQE EQQL