Gene Cpin_3386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3386 
Symbol 
ID8359552 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4149957 
End bp4150793 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content48% 
IMG OID644965559 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003123054 
Protein GI256422401 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.314719 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.674601 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAAAG TATGGTTTAT AACAGGTAGC GCAAGAGGTT TAGGCAGAAG CCTGACAGCA 
GCAGTATTAG CAAAAGGTGA TCTCGTGGCA GCAACCGCCA GAAATCCTTC ACAGTTAGAT
GAATTCGTTC AGCAATATGG CGATCATATA TTCCCCGTTC AACTGGACGT TACAGATTAT
ACACAGGTAC GCAAAGCAGT AGAAAATACC ATTGCGCGTT TCGGCAGGAT AGATGTACTG
GTAAATAATG CCGGTTTTGG TATCATTGGG GCAGCAGAAG CATTTACAGA CGAGCAGGTA
CGTAGTCAGC TGGAAACAAA TCTGTACGCA CCGATAGAAA TTACAAGAGT TGTGTTACCT
TATATGCGTA AACAACGCTC CGGCAGGATA CTGCAGATCA GTTCCATCGG TGGTCGTATC
ACCAGCAATG GCCTGACCAT GTACCAGAGC GCTAAATGGG GTCTCTCCGG CTTCGCAGAC
GGTCTTGCGA AAGAAGTAGG TGCACTGGGT ATTAAAGTGA CTGCCGTTGA ACCAGGTGGA
TTTCGTACCG ACTGGGCAGG CGATTCAATG ACCTACGCAG CAAACGTAGA AGGATATGAA
TCTACGATTG GTCAGCGGAC AGAGATCTTC AAAACCGGTA AATTTGTTCC TAAAGGCGAT
CCTGAAAAAG CAGCAGCCGT ACTGGTGAAC CTGGCAGATC ATCCGGAACC TCCTGTACAC
CTCGTATTAG GTAGTGATGC AACCGGGCTA CTGCAACAGG TGAATGCTGC AAGACAGGCC
GAATTTGAAC AATGGTTGTC TGTGAGCGAG TCCACCGATG CAGCCGACAA CAAATAA
 
Protein sequence
MQKVWFITGS ARGLGRSLTA AVLAKGDLVA ATARNPSQLD EFVQQYGDHI FPVQLDVTDY 
TQVRKAVENT IARFGRIDVL VNNAGFGIIG AAEAFTDEQV RSQLETNLYA PIEITRVVLP
YMRKQRSGRI LQISSIGGRI TSNGLTMYQS AKWGLSGFAD GLAKEVGALG IKVTAVEPGG
FRTDWAGDSM TYAANVEGYE STIGQRTEIF KTGKFVPKGD PEKAAAVLVN LADHPEPPVH
LVLGSDATGL LQQVNAARQA EFEQWLSVSE STDAADNK