Gene Cpin_3358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3358 
Symbol 
ID8359524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand+ 
Start bp4122362 
End bp4123024 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content50% 
IMG OID644965531 
Productputative transcriptional regulator 
Protein accessionYP_003123026 
Protein GI256422373 
COG category[K] Transcription 
COG ID[COG2345] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0338727 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.270871 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAAAATT ATAGACCCAT CACAAAAGCA ACTGCTGACA AGTTTTTGCA GTTACTCAAA 
ACGAAGGGGC CTCAGTCGGC CGCTATGTTG GCTGCTGCGC TAGGTATAAC AGGAGAGGGC 
GCCCGCCTGC AGCTGCTGAA GCTTGCAGAA GAAGGGCTTG TGGTGTCGGC TACCAGCTCA 
AGAGGCGTGG GCCGGCCCGT TCAGATATGG GATCTTACAC CATTAGGTCA TGCCCATTTT 
CCAGACACAC ATGTAGAGCT GACACTGCAA TTAATAGAAA CCATCCGCCG GGAACTCGGC 
GAAGCTGCTC TTGAAAAAGT CGTGGCCGCC CGTGAATTCC AGCAACAGGA GAAATATATC 
AATGCACTGA CAGGCATTAC CGGCCTGGCA GAAAGACTGG CGCAATTTGC GACTATCCGC 
TCTTCCGAAG GCTACCTGGC CGAATGGAAA GAGGAAGAAG ATGGCTTTGT ATTCATTGAA 
AATCATTGCC CTATCTGCTG CGCTGCCACG CAGTGCGCTA ATATCTGCGA GTCTGAACTG 
AAAACCTTCC GTACCATCAT GGGTGAGGAA GTAGACGTAA AACGTGTCGA TCACATTATT 
GCCGGTAACC GTCGTTGCGT ATATAAGATC ACGCGTATTA AAGAGTTGAT TACCAGTCGA 
TAA
 
Protein sequence
MENYRPITKA TADKFLQLLK TKGPQSAAML AAALGITGEG ARLQLLKLAE EGLVVSATSS 
RGVGRPVQIW DLTPLGHAHF PDTHVELTLQ LIETIRRELG EAALEKVVAA REFQQQEKYI 
NALTGITGLA ERLAQFATIR SSEGYLAEWK EEEDGFVFIE NHCPICCAAT QCANICESEL 
KTFRTIMGEE VDVKRVDHII AGNRRCVYKI TRIKELITSR