Gene Cpin_3339 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3339 
Symbol 
ID8359505 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4103994 
End bp4108586 
Gene Length4593 bp 
Protein Length1530 aa 
Translation table11 
GC content50% 
IMG OID644965512 
Producttransporter, hydrophobe/amphiphile efflux-1 (HAE1) family 
Protein accessionYP_003123007 
Protein GI256422354 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport
[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump
[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00211806 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTCGATA CTTTTATCAA ACGACCAGTA TTGTCGCTCG TGATCTCCCT GATCATCGTC 
CTGCTTGGAT TGCTGGCGTT ATTTACATTA CCTGTTACAC AATTCCCGGA TATCGTTCCT
CCATCCGTAA CGGTGACCGC CAAATATACC GGCGCCAATG CCGAAGTATG CGCCAAAGCC
GTTGCTACAC CACTGGAACG CGCCATCAAT GGTGTGCCGG GTATGACCTA TATGTCTTCT
GTTTCCAGTA ATAACGGTAT CACCCTTATA CAGGTCTTCT TCAATGTAGG TACTGACCCC
GATCAGGCGG CAGTAAACGT ACAGAACCGC GTAGCGACCA TCATCGATGA ATTGCCGGAA
GAAGTGATCA AGGCGGGTGT GACCACCGAA AAAGAGGTCA ATAGTATGCT GCTCTACCTC
AACGTAATGA GTGAAGACAG TACGCTCAAC GAACAGTTCA TCTACAACTT CGCTGATATC
AACGTCTTAC AGGAACTGAA AAGGATTGAT GGTGTTGGTT TTGCGGAGAT CATGGGTGCA
AAGGAATATG CGATGCGCGT ATGGCTTAAA CCTGACCGTA TGCTGGCCTA TAATCTCTCC
GCGGATGAAG TGATCAGTGG TATCCGTAAA CAGAACATTG AAGCAGCGCC TGGTAAAACA
GGTGAAAGTG CCGATAATGA TCCACAAGTA TTACAATACG TACTCCGCTA TACCGGTAAA
TTCTTTGACC CTGCACAATA CGAAAATATC ATCCTCAGAG CAAATCCGGA TGGTTCCGTA
TTAAAACTGA AAGATGTGGC GGACGTCACT TTCGGCGCCC TCAGCTACGG CATGGTATCT
AAAACAGATG GTAAGCCCTC TGCCTCTATC ATGCTGAAAC AACGTCCCGG CTCCAACGCA
CAGGAAGTTA TTGCCAATGT GAAAACACGG ATGGCTGAAT TAAAGGTCAG CACCTTCCCG
CCGGGTATGA GCTATAACTT CAACTATGAT GTATCCCGTT TCCTGGACGC TTCAATTCAT
GAAGTACTAC GAACATTGAT AGAGGCATTT ATCCTGGTGT TTATCGTTGT ATATCTCTTC
CTGCAGGACT TCCGGTCTAC ACTGATCCCG GCGCTGGCTG TGCCTGTAGC ACTGATCGGT
ACCCTGTGTT TTATGCAGAT GCTGGGCTTC TCCATCAACC TGCTGACACT GTTCGCACTG
GTGCTCGCCA TCGGGATAGT CGTCGATAAT GCCATCGTGG TGGTAGAAGC AGTGCACGTC
AAGATGCAGG AAACCCATCT GCCACCATTG GAAGCTACGC TCGCCGCCAT GAGAGAGATC
AGTGGAGCAC TGGTAGCAAT CACGCTGGTC ATGTCTGCTG TATTTGTACC TGTGGCATTC
CTTTCTGGTC CGGTAGGTGT GTTCTACCGC CAGTTCTCGC TCACACTCGC TATTGCGATT
GTGATATCAG GTATCAATGC CGTTACGCTG ACACCCGCAC TGTGTGCTAT TATGCTGCGT
CACAACCACG ATGCGGGTAA GAAGAAAAGT TTGCTGCAAC GCTTCTTTGA TAAATTCAAC
TTCGGATATA ATAAAACAGA ACGCAGCTAT TCAAAACTGG TCGGTTACAT CGCCGGCAGA
AAGATGATCA CGTTTGTACT GATGATCGTC TTCTTTATAG CTACCTGGGG CGCAAGCGCT
ATTCTGCCGG GCGGTTTCAT TCCTTCGGAA GACCAGGGTA TGATCTACGT AAACGTAACC
ACACCTGCCG GCGCCACCGT GGCCCGTACA GAAGCAGTAC TCGATCAGGT GCAACAAATC
GCTGCACGTC TGCCGGAAGG AGAATCTGTG TCTACCCTGG CGGGATTCAG TCTGGTGAAT
GATGTTGCTG GTGCTTCTTA CGGTATGGGT ATGATCAACC TGAAGCCCTG GGAAGAGCGT
AAACGCTCCG TGAAAGAGAT CATTGCTGCA CTGGAAAAAG AAACCAGGAA TATAGGTGAT
GCCAGTATTG AATTCTTCCC GCCTCCCACG GTACCGGGTT TTGGTAACTC AAGTGGTTTC
GAACTGCGTG TACTTGACCG TAGCGGTAGT GGCGATCTGA GACAAACGGC GGATGTGACC
AATAAGTTTA TCGCCGAACT GAAGAAACGT AAAGAAATCG GTAGTGCATT TACCAGCTTT
GACCCCGATT TCCCGCAATA TATGATTCAT GTGGATCAGG CGATGGCCGC CAAGAAAGGC
GTAAGTGTAG AAAATGCCAT GTCCACCCTG CAAACCTTGC TGGGTAGTTT TTACGCCTCC
AACTTCATCC GTTTCGGACA AATGTATAAA GTCATGGTAC AAGCCTCTCC GCGTTATCGT
ACGAAACCGG AAGATGTGAT GCACCTCTAT GTAAAGAATG ATACGGGGGA AATGGTGCCG
TTCTCCAACT TTATCCGCAT GGAAAGAGTG TACGGTCCGG AACAGCTGAC CCGTTACAAT
ATGTACACCG CGGCCATGAT CAACGGTGAC GCGGCACCGG GCTTTAGTAG TGGCGATGCC
ATCAAGGCGA TTGAAGAAGT AGCCGCAAAA TCACTTCCAC GTGGCTTTGC CTTTGAATGG
AGTGGTATGA CAAGAGAACA GATCTTATCG GGTAATCAGG CGGTTTATGT CTTTGCCTTG
TGTCTGTTAT TCGTATACCT GTTGCTGGCT GCACAGTATG AAAGTTTCCT CTTACCGTTA
CCGGTGATAC TTTCCCTGCC GGCAGGTATA TTCGGCGCCT TTATCACCCT GAAAATGGCC
GGACTGGAAA ACAACATCTA TGCACAGGTG GCATTAGTCA TGCTGATCGG ATTGTTGGGT
AAGAATGCCA TCCTGATCGT GGAGTTTGCC ATCCTGCGTA CCAAACAGGG ACTCTCTGTG
CTGGAAGCTG CCAAAGAAGG GGCCGTATCA CGTCTGCGCC CGATCCTGAT GACCTCCTTT
GCATTCATTG CCGGTCTGAT CCCTTTATGT ATCGCAAGTG GTGCAGGTGC GATGGGCAAC
CGTTCTATCG GTACGGCTGC AGCGGGTGGT ATGTTGATCG GAACGGTGTT CGGCGTACTG
ATCATCCCGG GCTTATATGT TTTATTCGCT TCTATTGGCA GTAAAAAGAA GACCAGGCCA
CAGACACCAA AACATGCGGT AGGCGCATTA ACAGTGTTAC TGATCGCAGG TCTGCTGACC
GGTTGTTATA CGCCATCCAA GGTGATCTTC CCTGATGCAC CTCAGGCACC ACAGGCGTTC
AGCAATCCGG TGAACGACAG CAACAAAGTG GCGACCGCCG ATAGCAGCAG TATCGCTACT
ATATCTTACA AGCAGTTCTT CACCGATTCC CTGCTGCAAC AATTACTCGA TACCGCCTTG
CGTAATAATA CCGACATGCT GATAGCGACA CAGCGGATGG AAACGGCCCG TGCTCAGCTG
ATGGCAGCCC GTCGTGCCTG GACGCCGGAA GTAAATGCAG TAGTAAGTGC TGGTGTGGAT
CGCTGGGGAG ATTACACACT GAACGGCGTA GGTAACTACG ATACGAACCT CTCACCCAAT
ATTGACGATA AACAAAGAAT ACCCGGACCT ACACCTGATT ACTTTGTAGG ATTGCGTAGT
TCCTGGGAAA TAGACCTCTG GGGAAAAATG CGAAGCCGTA AAAAGGCGGC CATGCTGCGG
TTCATGTCCA GCGAACAGGG ACGCCAGCTG ATAAGCACAC AATTGATCTC GCAGGTGGCC
GGCATGTACT ATCAGCTCAT GGTACTGGAT TACGAGCAGC AGGTGATATT GCGGAATATT
GCTTTACAGG AGTCTGCACT GGCGACAGTA CAGATACAGC AGGAAGCAGG CCGGGCCACT
TTACTCGCGG TACAACAATT CAATGCGCAA TTGCTCAATA CCCGCAGCAT GTCACTGGGA
CTCCGGCAAC AGACCCTGGA ACTGGAGAAT CAGCTCAATG CCCTGCTGGG CCGTTTCCCG
CAAAGCATCA AACGCGATTC TGCACTGCTG ACAATGCCAC TACCACCGTT TGCCCGAACG
GGTGTTCCGG CAGGTATGCT GGCACTCCGG CCAGACATCC GACAGGCGGC ATTGGAACTG
GAAGCCGCCA AAGCAGACAT TCATGCGGCG AAAGCATCTT TCCTGCCATC ACTGAATATC
ACGCCTTACC TGGGCCTGAA TTCATTTAAC GCGGGCACAC TGTTCAACAC GCCTGCTTCT
GTAGCCTATG GAGTACTGGG TGGTTTATCA GCGCCATTGC TGAACAGACA ACAACTGCGT
TCGCAGTATA ATATCACGAC AGCTGCTGGT ATGACTGCCT TTTATGACTA CAGACAGCGG
GTGATCAATG GCTACCAGGA AGTGATATCA GCATTGGGTA AGATACAGAA CGGACAGGAA
GCCTATACGC TGAAGGAAGC AGAGGTAGAA ATGCTGAAGA ACGGTGTTTC CACAGCTAAT
GTCCTATACG CCACAGGTTA TGCTAATTAC CTGGAGGTGA TCACTGCACA AAAAAGTGTA
CTGGAAGCTG AACTCGCATT GGCCGGTAAT AAAAAAGAAT TATTGTTGGG GACCATCACC
CTATATAGGG CGCTGGGCGG AGGAAGACAA TAA
 
Protein sequence
MFDTFIKRPV LSLVISLIIV LLGLLALFTL PVTQFPDIVP PSVTVTAKYT GANAEVCAKA 
VATPLERAIN GVPGMTYMSS VSSNNGITLI QVFFNVGTDP DQAAVNVQNR VATIIDELPE
EVIKAGVTTE KEVNSMLLYL NVMSEDSTLN EQFIYNFADI NVLQELKRID GVGFAEIMGA
KEYAMRVWLK PDRMLAYNLS ADEVISGIRK QNIEAAPGKT GESADNDPQV LQYVLRYTGK
FFDPAQYENI ILRANPDGSV LKLKDVADVT FGALSYGMVS KTDGKPSASI MLKQRPGSNA
QEVIANVKTR MAELKVSTFP PGMSYNFNYD VSRFLDASIH EVLRTLIEAF ILVFIVVYLF
LQDFRSTLIP ALAVPVALIG TLCFMQMLGF SINLLTLFAL VLAIGIVVDN AIVVVEAVHV
KMQETHLPPL EATLAAMREI SGALVAITLV MSAVFVPVAF LSGPVGVFYR QFSLTLAIAI
VISGINAVTL TPALCAIMLR HNHDAGKKKS LLQRFFDKFN FGYNKTERSY SKLVGYIAGR
KMITFVLMIV FFIATWGASA ILPGGFIPSE DQGMIYVNVT TPAGATVART EAVLDQVQQI
AARLPEGESV STLAGFSLVN DVAGASYGMG MINLKPWEER KRSVKEIIAA LEKETRNIGD
ASIEFFPPPT VPGFGNSSGF ELRVLDRSGS GDLRQTADVT NKFIAELKKR KEIGSAFTSF
DPDFPQYMIH VDQAMAAKKG VSVENAMSTL QTLLGSFYAS NFIRFGQMYK VMVQASPRYR
TKPEDVMHLY VKNDTGEMVP FSNFIRMERV YGPEQLTRYN MYTAAMINGD AAPGFSSGDA
IKAIEEVAAK SLPRGFAFEW SGMTREQILS GNQAVYVFAL CLLFVYLLLA AQYESFLLPL
PVILSLPAGI FGAFITLKMA GLENNIYAQV ALVMLIGLLG KNAILIVEFA ILRTKQGLSV
LEAAKEGAVS RLRPILMTSF AFIAGLIPLC IASGAGAMGN RSIGTAAAGG MLIGTVFGVL
IIPGLYVLFA SIGSKKKTRP QTPKHAVGAL TVLLIAGLLT GCYTPSKVIF PDAPQAPQAF
SNPVNDSNKV ATADSSSIAT ISYKQFFTDS LLQQLLDTAL RNNTDMLIAT QRMETARAQL
MAARRAWTPE VNAVVSAGVD RWGDYTLNGV GNYDTNLSPN IDDKQRIPGP TPDYFVGLRS
SWEIDLWGKM RSRKKAAMLR FMSSEQGRQL ISTQLISQVA GMYYQLMVLD YEQQVILRNI
ALQESALATV QIQQEAGRAT LLAVQQFNAQ LLNTRSMSLG LRQQTLELEN QLNALLGRFP
QSIKRDSALL TMPLPPFART GVPAGMLALR PDIRQAALEL EAAKADIHAA KASFLPSLNI
TPYLGLNSFN AGTLFNTPAS VAYGVLGGLS APLLNRQQLR SQYNITTAAG MTAFYDYRQR
VINGYQEVIS ALGKIQNGQE AYTLKEAEVE MLKNGVSTAN VLYATGYANY LEVITAQKSV
LEAELALAGN KKELLLGTIT LYRALGGGRQ