Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3282 |
Symbol | |
ID | 8359448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 4040732 |
End bp | 4041547 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644965455 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_003122950 |
Protein GI | 256422297 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0185565 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAATTCA GACAAATACC TCCTCCGCAA TATCTCAGGG ACTACATCCG GTTCTTCTGG GTACTGGAAA GTAACGATAA AGATGTTGCT GCTGCCACCT TCAGGACAAT TGCTGATGGT TGCCCGGGAC TTATTTTCCA GCACCGGGAC CACGGCATAC TGTTTCAGAA CGACAAACAG CTGCCCGGGA CCATTCTCTA CGGACAGGCT ACCAGACATG CCGCTTTGCG GATAGACGGC CGTTTTGATA CCATTGGCAT ATTTTTCTAC CCACACGCTT TAAAGTCCAT CTTCGGACTG AATGCCGATG AACTGACAGA TACCTGTCTT GACCTTGACG GAATCCCGGC ATCCCGTGGT TTTCAGTTAT CTGCGCAACT GACTGATATC AGCGCTCCTG AAGCCAGGAT AGATATCCTT TGTTCTTTCC TGCTGGCACA GCTGACAAAG TATCATCAGC AGTCAGACAA GGCCATGCAT CATGCGCTGG ACCGTATCCG GCAGACCAAT GGCAATATCT CTGTAAAAGC GCTGAGAGAA GAGTTACAGT TATCAGAAAG AAGTTTTGAG CGCAAGTTCA AACAGCATGT GGGCATCACA CCCAAGCTCT TTGCGCGTAT TGCGCAGTTT CAGGCATCCA TGCAGTTAAT CCGCCAAAGC GATTATAACA AACTCTCTGA TATCGCTTTT GAAAATGAAT ATGCCGATCA GTCTCATTTC ATCCGCGCCT TCAAAGAATT CGCAGGCGCC TCTCCTTTTC AGTTCATGAA GAAATCAGAA GAACTGATCG AGAACCTTTC CATCCTGACG AAATAA
|
Protein sequence | MQFRQIPPPQ YLRDYIRFFW VLESNDKDVA AATFRTIADG CPGLIFQHRD HGILFQNDKQ LPGTILYGQA TRHAALRIDG RFDTIGIFFY PHALKSIFGL NADELTDTCL DLDGIPASRG FQLSAQLTDI SAPEARIDIL CSFLLAQLTK YHQQSDKAMH HALDRIRQTN GNISVKALRE ELQLSERSFE RKFKQHVGIT PKLFARIAQF QASMQLIRQS DYNKLSDIAF ENEYADQSHF IRAFKEFAGA SPFQFMKKSE ELIENLSILT K
|
| |