| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3159 |
|---|
| Symbol | |
|---|
| ID | 8359324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3894230 |
|---|
| End bp | 3894916 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644965331 |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_003122827 |
|---|
| Protein GI | 256422174 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000555456 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAACA AGCAATATAC TACCGCGGAG CCTCAATTAC GGAACGCTAT CGCCACTTTC
GTCAATATCT TCCTGCCAAG GAAGGGATAC CTAGTTACTC CTGTTCTTAT AGCCATTAAT
TTTCTTGTAT TTGCCATAGC CTGGAGCTGC GGATATGATG TCATGAAATT GGGACCTGAG
GAGATGGATC AACTAGGCAA ACATATCCAT TCAGTGGTTC AGCAGGGAGA ATGGTGGTGG
ATCGTCGCCT ATCTTTTTCT GAATGGAGGG TACATTTATA TTATAGTAAC TACTACTATC
CTTTTTATAC AGGGCTATCT GTTTGAGAAA TATGTAGGAA CACTGACTTT TTTAGGAATA
TACCTGGCAG CGGGAATAGT AGGCAATATA GAGGCCGTTC TCTTCTCCAA CATTTCGCCT
TTGTTTCATA CGGGGCCTTT TGGCGGCATA CTTGGCGTGT TTGGCTTTGT TACGTTCCTT
ATGCTTACCC AGCAGATCAA GGTATCCGCT ATTCATGGAG GGCTGATCTT TTTTGTTTCC
GTTCTGCTAT CGGGATATCT GAAAGGCCTT GACGAAAACA GCGTTGGTCC AATGATCATT
AGCCTCGCCT TTGGAATGGG TTTCGGCTAC ATACAGTATG TAAAATTGAA ACGAAAGAAG
CAACTGTCAC ACTTTTCAGA AATATAG
|
|---|
| Protein sequence | MSNKQYTTAE PQLRNAIATF VNIFLPRKGY LVTPVLIAIN FLVFAIAWSC GYDVMKLGPE
EMDQLGKHIH SVVQQGEWWW IVAYLFLNGG YIYIIVTTTI LFIQGYLFEK YVGTLTFLGI
YLAAGIVGNI EAVLFSNISP LFHTGPFGGI LGVFGFVTFL MLTQQIKVSA IHGGLIFFVS
VLLSGYLKGL DENSVGPMII SLAFGMGFGY IQYVKLKRKK QLSHFSEI
|
|---|
| |