Gene Cpin_3117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3117 
Symbol 
ID8359282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3836832 
End bp3837779 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content48% 
IMG OID644965290 
Productglycosyl transferase family 2 
Protein accessionYP_003122786 
Protein GI256422133 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.199374 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTT CCGTAATCGT TCCCTTAAAA AACGAAGAAG AATCACTGCC TGAACTGGCT 
GCCTGGATTG ACCGTGTCAT GCAGGAGCAT CGATACTCAT ATGAAGTATG GATGATAGAT
GATGGCAGCA CTGATAATTC CTGGGATATC ATTCAGCAAC TCGCCGCCAG CAATCCAAAT
ATAAAAGGCA TCAAGTTTCA ACGTAACTAT GGTAAATCCG CCGCCCTTAA TGAAGGCTTC
AGAGCCGCAC AGGGCGATGT GGCGATTACT ATGGATGCCG ACCTGCAGGA TAGTCCTGAC
GAAATTCCTG AACTATACCG CATGATCAAA GAAGATGGCT TTGACCTGGT CAGCGGCTGG
AAGAAGAAAC GTTACGACAG CGCACTCACC AAAAACCTTC CCTCCAAATT ATATAACTAT
ACCACTACCC GCATGAGCGG TGTAAGGCTG CATGACATGA ACTGCGGACT CAAATCCTAC
AGTCGTAAAG TCATCAAAAG CATAGAGGTA TATGGAGAAA TGCACCGTTA CATCCCGGTT
ATCGCCAAAT GGAACGGTTT CAGGAAGATT GGTGAGAAAG TGGTAGAGCA TCGCGCCCGT
AAATACGGCA CCTCCAAGTT TGGCCTGGAA CGCTTCATCA ACGGCTTCCT TGACCTGGCT
TCCATCATGT TCATCAGCAA ATTCGGAAAA CGTCCGATGC ACCTCTTCGG CGCACTGGGC
ACACTTTCCT TTATACTTGG TTTTGGTATC TCCGTATACC TGGCCATTCA GAAATTTGCC
TACTCCCAGT ATAAGATGAC CGAGCGTCCT CTCTTCTACC TGGCCCTGCT GGCAATGATC
ATAGGGTCAC AGTTATTCCT TACCGGCTTC ATCGCCGAGC TGGTCACCAG GAACGCGCCG
GAGAGGAATG AATATCTTGT GGAATCTATC CTTGATCGCA CTAAATAA
 
Protein sequence
MDISVIVPLK NEEESLPELA AWIDRVMQEH RYSYEVWMID DGSTDNSWDI IQQLAASNPN 
IKGIKFQRNY GKSAALNEGF RAAQGDVAIT MDADLQDSPD EIPELYRMIK EDGFDLVSGW
KKKRYDSALT KNLPSKLYNY TTTRMSGVRL HDMNCGLKSY SRKVIKSIEV YGEMHRYIPV
IAKWNGFRKI GEKVVEHRAR KYGTSKFGLE RFINGFLDLA SIMFISKFGK RPMHLFGALG
TLSFILGFGI SVYLAIQKFA YSQYKMTERP LFYLALLAMI IGSQLFLTGF IAELVTRNAP
ERNEYLVESI LDRTK