| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2830 |
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| Symbol | |
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| ID | 8358991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3486810 |
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| End bp | 3488174 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644965010 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_003122510 |
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| Protein GI | 256421857 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000458855 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGAAAT TAGCACATAG CAGCTTACAC GATAAGCAGA TAGAAACACT GGCGACACAG
TCACAGTCAG AATTGATCAA GGTAAAGGGT TCGCGTATAC TGGGCAGGAT CATCACCGTT
TGCCTCATCC TGCTGATCAT TATTTTATTC CTGCCCTGGC GGCAGACGAT CCCTGGTAAA
GGGACGGTAA CAGCGTTAAG ACCAGAAGAC AGGCCACAAA CAGTACAGAA CCAGATTGGG
GGACGTATCG AGCGTTGGGC CGTAAGAGAA GGACAGGAAG TGAAGAAAGG AGATACCATA
CTCGTGATAT CAGAGACCAG CCAGTCCTAT TTTGACCCGG AACTGCCTTT GCGACTGGAT
GAACAGCTGG AAGCAAAGAA GGGCAGCGAA GCAGCCGCCT TACAGAAGAT GGATGCAACC
AATGCACAGA TACAGGCGCT GGGTAGCGGA CTGCGTTATC AGTTATCGGC TGCTGAAAAT
AAAGTACATC AGTCCGAAAA CTATGTCAAG ATAGACAGCG CTGATCTCGT GGCGGTACAG
AACTTTTATG AGACATCGAA AGCGCGTTTA CAGCGTTATG AGTCGGGGTA TAAAAACGGA
TTGTTCTCCC TTACGGATAT AGAAACCCGT CGCCTGAAAT TACAGGAAGA CCAGGCTAAG
GTGATCGGAC AACAAAACAA GCTTAATAAC TCGAAGCAGG CCTTGTTAAA TGCTCTTATC
GACCTGGATA ATATTAAAGC CAAGTACCAG GAATCCCTGG CAAAAGCACA ATCTGATATG
AGTTCGGCTT TATCCAGCCG TGCGAGTGTA CGCGGAGAGA TCGCTAAGCT GCGGAATGAT
ATCTCCAATA TATCTATACG TCGTGCGCTA TACATTGTGC GTGCCCCACA GGATGGATTT
GTGGTAAAGA CGCTGAAGGC TGGTATTGGT GAGAACATTA AAGAAGGGGA ATCCATCGCC
ACACTGCAAC CCCTGCATCC GCAGGTAGCA GCTGAACTAT ATGTAAACGC GATGGACGTA
CCGCTGATCC TCGATACCAG CGATGTACGA CTCCAGTTTG AAGGATGGCC TTCGGTACAG
TTCTCTGGCT GGCCTTCTGT AGCGGTAGGT ACTTTCGCCG GTAAGGTATG GGCGATCGAC
CGTGTGAGCA GTAATGGCGG TAAATACCGT CTGCTGATAA AACAGACGGC GCCGGTACCG
GAGAATGACG AACCATGGCC TATACAGCTC AGACAGGGCT CTGGCGTATA TGGTCGTATT
ATTCTCCGCT CAGTACCCTT ATGGTATGAG ATCTGGCGAC AGCTGAACGG CTTCCCGCCA
AGTCTGGAGA AAGAACCTTC TGAGAAAGAG TCTGGAAAGA AATGA
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| Protein sequence | MGKLAHSSLH DKQIETLATQ SQSELIKVKG SRILGRIITV CLILLIIILF LPWRQTIPGK
GTVTALRPED RPQTVQNQIG GRIERWAVRE GQEVKKGDTI LVISETSQSY FDPELPLRLD
EQLEAKKGSE AAALQKMDAT NAQIQALGSG LRYQLSAAEN KVHQSENYVK IDSADLVAVQ
NFYETSKARL QRYESGYKNG LFSLTDIETR RLKLQEDQAK VIGQQNKLNN SKQALLNALI
DLDNIKAKYQ ESLAKAQSDM SSALSSRASV RGEIAKLRND ISNISIRRAL YIVRAPQDGF
VVKTLKAGIG ENIKEGESIA TLQPLHPQVA AELYVNAMDV PLILDTSDVR LQFEGWPSVQ
FSGWPSVAVG TFAGKVWAID RVSSNGGKYR LLIKQTAPVP ENDEPWPIQL RQGSGVYGRI
ILRSVPLWYE IWRQLNGFPP SLEKEPSEKE SGKK
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