| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2784 |
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| Symbol | |
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| ID | 8358945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3427241 |
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| End bp | 3430411 |
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| Gene Length | 3171 bp |
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| Protein Length | 1056 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644964964 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_003122464 |
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| Protein GI | 256421811 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.155653 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0401232 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAGAA GATTTATAGA AAGACCCGTA CTGGCAACGG TGGTGTCCAT TATCCTGGTA
TTGCTGGGAT TATTGTCGCT CGCCACCCTG CCCGTGACGC AGTTCCCCGA TATCGCACCG
CCCAGTGTGG CCGTAACAGC CTCCTATCCG GGTGCGAACG CGGAAGTGGT AGCCCGTTCA
GTAGCAACGC CTATTGAAGA AGCAGTGAAT GGTGTGGAGA ACATGACCTA TATGACCTCC
ACTTCCAACA ACGACGGCTC CATGACGCTG ACCGTATACT TTAAACTGGG TACTGATCCT
GACCTCGCCG CTGTAAACGT ACAGAACCGC GTGGCGAAAG CGACCAGCCT CCTGCCGGTA
GAAGTAGTGA GCGCAGGTAT CACCACACAG AAACAGCAGA ACAGTATGAT CATGGTGGTG
AACCTGTTCA GCGAAATGGC TGAATATGAT GAGAAGTTTT TGCAGAACTA CGCAAAGATC
AACATCATCC CCGAAATACA ACGTGTGACC GGTGTCGGTC AGGCAATGGT ATTCGGTGCG
AAAGATTACT CTATGCGTAT CTGGTTGCGC CCTGACCGTC TCGCTGCCAA TAACCTGTCT
CCCCAGGATG TATTGAGCGC GATCCGTGAA CAGAACCTTG AAGCAGCACC AGGTCGTTTC
GGTGAAAGCA GCAAGGAAGC ATTTGAATAT GTGATCAAAT ACAAAGGAAA GCGTAACCAG
AATGCACAGT ATGAAGACAT CGTACTGAAA GCAAATGCAG ACGGTTCGCT GCTGCGCCTG
AAAGACGTGG CACGTGTAGA ATTCGGTTCC TTTACTTATA GCAGTGACAC ACACGTAAAT
GGTAAATATG GTATCGGTAT CGCGATTTAT CAGACGGCCG GTTCCAATGC CAACGAAATA
CAGACGCAGG TAAACGAGCT GATGAAAAAA GCAGCCGGGC TGTTCCCGAA TGGGGTAGAT
TATTTCAATA TCTACAGCAC CAAGGAATAC CTGGATGAAT CGATCGACCA GGTGAAACAT
ACACTGATAG AAGCCTTTAT CCTGGTGTTT ATAGTTGTGT TCATCTTCCT GCAGGATTTC
CGTTCTACCC TGATTCCTGC TATCGCAGTA CCTGTAGCGA TCATCGGTAC TTTCTTCTTC
ATGCAGCTGT TTGGTTTTAC CATCAACCTG CTTACCCTGT TCGCACTCGT ACTGGCCATC
GGTATTGTGG TGGATGACGC CATTGTGGTC GTCGAAGCCG TACACTCAAA AATGGAGACC
ATTAATATGT CCCCAAGGGC AGCCACGATC ACCAGTATGC AGGAGATATC CGGTGCGATC
ATCTCCATCA CCCTCGTAAT GGCAGCGGTA TTCATACCGG TTGGTTTCAT GCAGGGACCG
GCAGGGGTAT TCTACCGGCA GTTCGCCTTC ACACTGGCAA TTGCCATCCT GATCTCCGCA
CTGAACGCAT TGACCCTGAG TCCGGCCTTA TGTGCGCTGC TGCTGAAGAA CAACCATAGC
AATCAAACGC ACGGCACTGC TTATACAAAA GGTTTTGGTA AGCGCTTCTT TACAGCTTTC
AACTCCGGTT TTGAAGCAGT GACCAATAAA TACATCCATA GCGTTCGTTT CCTTGTAAGA
CGCAAATGGG TGCCTTTAAC TGCGCTGGCA ATTATTATCG GTGTGACCGT ATGGCTGGTG
AAGAGAACCC CGACCGGTTT TATCCCCACA GAGGATAATG GTTTTGTGGT ATATTCTGTA
ACCATGCCGC CGGGATCTTC CCTGCAACGT ACACAGGAAG TGGTGAATAA AGTAGAGAAG
GAAATGAAAG CGTTGGAATC AGTGAACAGT TTCCTGAGCG TATCGGGTTT CAACCTGCTC
ACCAACTCTA ACAGTTCTGC TTCTGCCGTA GGTTTCGTGA AACTGAAGAA ACACGAAGAG
CGTGGTCAGA TGAAAGACCT GAAAGATGTA ATGGGCATGA TGCAGGCTAA ACTGGCGGGC
ATCAAGGAAG CCAATATCTT CATGTTTAAC ATTCCGACCG TGCCTGGTTT CAGTAACGTG
GATGGTTTTG AGGTGATCCT GCAGGACCGT AACGGCGGAC CAATCGATAA ACTGGCCAAT
ACGGCGTATG GTTTTATCGG CGAACTGATG AAACGTAAAG AGATCGCTTT TGCCTTCACC
ACCTTCAATG CCGGTAACCC GCAATATAAC CTGGAAATCG ATGAAGCAAA GGCCAAACAG
CTGGGTATCT CTTTATCAGA TATCCTCCAG ACCATGCAGG TATATTATGG CAGCACCTTC
GCTTCCGACT TCAACCGCTT CGGTAAATAC TACCGTGTAA TTGTACAGGC GGAAGCGCCT
GCACGTGCAG AACCGGCTTC ATTGAACGAG ATTTTTGTAA AGAACAGTAC CGGTGAAATG
GTACCGGTGA ATGCAGTCGT GAAACTGGAA AGAGTATACG GTCCGGAAAC AGTGACCCGT
AATAACCTCT TCAATGCCGT AACGATTAAC GGTCAGCCGA AACCTGGTTA CAGCTCCGGT
GACGCGATCA AGGCAGTAGA AGAAGTGGCA CAGCAATACC TGCCAAGAGG TTATTCTTAT
GAGTGGGTAG GTATGACGAA AGAGGAGATT GCGGCAGGCG GACAGGCAGG TATCATCTTC
CTGTTATGTC TTGTGTTTGT ATACTTCCTG CTGGCCGCAC AGTATGAAAG TTATATCCTG
CCGTTGTCAG TGCTACTGTC TATTCCGCTG GGTATCTTCG GTGTATTCGT ATTCATTAAC
CTGTTTGGTA TTGACAATAA TATATATGTG CAGGTAGGTC TGATCATGCT GATTGGTCTG
TTGGCGAAAA ACGCGATCCT GATCGTGGAA TATGCCGTAC AGCGACGTCG TAATGGTATG
GGACTATTAG CTGCTGCACT GGAAGCATCC CGTTTACGTC TCCGTCCGAT CCTGATGACG
TCCTTCGCCT TTGTGGCTGG TCTGACACCG CTGATGCGGG CGACAGGTTC CTCGGCATTG
GGTAACCGTT CCATCAGTAC CGGCGCGGCT GGTGGTATGC TGACAGGTGT GATACTGGGT
ATCTTCGCTA TTCCTGTATT GTTTATCATT TTCCAGTATT TACAGGAGAG GATCAGCGGT
AAGCCGTTCA AGACGACACA TACAGATGCA GCAAGCGATG CAACCGTATA A
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| Protein sequence | MLRRFIERPV LATVVSIILV LLGLLSLATL PVTQFPDIAP PSVAVTASYP GANAEVVARS
VATPIEEAVN GVENMTYMTS TSNNDGSMTL TVYFKLGTDP DLAAVNVQNR VAKATSLLPV
EVVSAGITTQ KQQNSMIMVV NLFSEMAEYD EKFLQNYAKI NIIPEIQRVT GVGQAMVFGA
KDYSMRIWLR PDRLAANNLS PQDVLSAIRE QNLEAAPGRF GESSKEAFEY VIKYKGKRNQ
NAQYEDIVLK ANADGSLLRL KDVARVEFGS FTYSSDTHVN GKYGIGIAIY QTAGSNANEI
QTQVNELMKK AAGLFPNGVD YFNIYSTKEY LDESIDQVKH TLIEAFILVF IVVFIFLQDF
RSTLIPAIAV PVAIIGTFFF MQLFGFTINL LTLFALVLAI GIVVDDAIVV VEAVHSKMET
INMSPRAATI TSMQEISGAI ISITLVMAAV FIPVGFMQGP AGVFYRQFAF TLAIAILISA
LNALTLSPAL CALLLKNNHS NQTHGTAYTK GFGKRFFTAF NSGFEAVTNK YIHSVRFLVR
RKWVPLTALA IIIGVTVWLV KRTPTGFIPT EDNGFVVYSV TMPPGSSLQR TQEVVNKVEK
EMKALESVNS FLSVSGFNLL TNSNSSASAV GFVKLKKHEE RGQMKDLKDV MGMMQAKLAG
IKEANIFMFN IPTVPGFSNV DGFEVILQDR NGGPIDKLAN TAYGFIGELM KRKEIAFAFT
TFNAGNPQYN LEIDEAKAKQ LGISLSDILQ TMQVYYGSTF ASDFNRFGKY YRVIVQAEAP
ARAEPASLNE IFVKNSTGEM VPVNAVVKLE RVYGPETVTR NNLFNAVTIN GQPKPGYSSG
DAIKAVEEVA QQYLPRGYSY EWVGMTKEEI AAGGQAGIIF LLCLVFVYFL LAAQYESYIL
PLSVLLSIPL GIFGVFVFIN LFGIDNNIYV QVGLIMLIGL LAKNAILIVE YAVQRRRNGM
GLLAAALEAS RLRLRPILMT SFAFVAGLTP LMRATGSSAL GNRSISTGAA GGMLTGVILG
IFAIPVLFII FQYLQERISG KPFKTTHTDA ASDATV
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