Gene Cpin_2663 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2663 
Symbol 
ID8358823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3251542 
End bp3252600 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content48% 
IMG OID644964845 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_003122346 
Protein GI256421693 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACCA GATATATTAC CATTATTGCC ATCATAGCGA TCGTTGCACT GATCGTGTTT 
AAGCTGGCCG CTAATAAGCG CAAACTGAAT GAAAAGAATA ATCCGGCCCC GGTTGCCGCT
GTACGTATTC CTGTAAAAGT CGCAGCAGCT GCAGAGCAGG TATTGGAGAT CAATATTCTC
AAAACGGGTA ACCTCGCCCC GTTTAAAGAA GCAAAAGCCC TGGCTATGTC AGGTGGTACG
CTATTAAAAG TAAACTTCGA CCTGGGCGAT AAGGTAAAAC AGGGACAGGT ACTGGCAGTG
ACAGATACCC GCCTCGCGCA ACTGGAATTG CAGAAGGCAG AAACGAACGC CGCCAAACTG
AAGAATGACC TGAATGTATA CACCGAACTC CTGGCTGGTA AGGCCGCTAC ACAGGAGAAA
GTTAACGGTA TCAGACAGGA CTATGAAAAT GCCGTTAACC AGGTACAGCA GGCAAGAAAG
AATATTTCAG ATGCCGCTAT TCTGGCGCCT ACAGGCGGTG TGATCGCTGC CAAGAAAGTA
GAACAGGGCA TGTTTGTAAA TGCGGGTACG GAGATCGCCT CCATTGTTAA TCTTTCCCGT
GCAAAAGTAC AGGTGAATCT TACGGAAGCC GAAGTATATA AAGTGAAGGA AGGACAACCC
GTGAAGATCA GCACAGACGT CTATCCCGGT AAAACATTCA GTGGTACGAT CAGCTTTATA
AGTCCGCAGG CAGATGAAAC GCACAACTAC CTCGTAGAGA TCCTTATCGG AAACGACAAC
GAAACCCTGC TCAGATCAGG CACATTTGTA TACGTTGATT TCTCCCGGAA GACAGAACAG
CAGGTACTGG TCATCCCCAG AGAAGCACTG ACAGAGAGCG TGAAAGACGC TGCCGTATAC
GTATTGCAGG ATAGCGTGGT ACACCAGCGT AAAATACAGA CGGGCGCTGA TGTGAACGGC
ATGGTACAGG TGCTCGGTGG ATTGAAACCA GGAGAACAGG TGGTGACCTC CGGTCAGATT
AATTTAAAGG ATGGCAGTGT TGTCAGTGTC TCCAAATAA
 
Protein sequence
MRTRYITIIA IIAIVALIVF KLAANKRKLN EKNNPAPVAA VRIPVKVAAA AEQVLEINIL 
KTGNLAPFKE AKALAMSGGT LLKVNFDLGD KVKQGQVLAV TDTRLAQLEL QKAETNAAKL
KNDLNVYTEL LAGKAATQEK VNGIRQDYEN AVNQVQQARK NISDAAILAP TGGVIAAKKV
EQGMFVNAGT EIASIVNLSR AKVQVNLTEA EVYKVKEGQP VKISTDVYPG KTFSGTISFI
SPQADETHNY LVEILIGNDN ETLLRSGTFV YVDFSRKTEQ QVLVIPREAL TESVKDAAVY
VLQDSVVHQR KIQTGADVNG MVQVLGGLKP GEQVVTSGQI NLKDGSVVSV SK