| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2469 |
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| Symbol | |
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| ID | 8358627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3041550 |
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| End bp | 3044660 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644964655 |
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| Product | glycoside hydrolase family 2 TIM barrel |
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| Protein accession | YP_003122158 |
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| Protein GI | 256421505 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.362924 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCCTGC TGTCACAGTG GCTAACAGCC GCCGCACAGA CGAAAGAGAC AGGGGACGTT
CCGGTGGAAA TTGAAAATCC ACGTATTACA GGTATCAACA AGGAGGCAGC TCATGCAACG
CTCATGCCTT ACAGTAATCT CACAGAGGCG CTTAAAGGAA ACAGGAAGGC TTCTTCCCGA
AGTCTGTTGT TAAATGGTAC ATGGAAGTTC AACTGGGTTT CCTGGCCACA GAAAAGACCG
GTGGACTTTT ATAAACCAAC TTACAATGTA TCCGGATGGG ATACCATCAC CGTTCCTTCC
AACTGGCAGG TGAAGGGCTA CGGCACGCCC TTTTACAGTA ACTACAATTA TACTTTTCAG
AAGAACTTTC CCAGGGTAAT GAGTACCCCG CCAAAGAACT TCACCGCATT TACAGAAAGA
AACCCTGTAG GTAGCTATCG CCGCGATTTT ACGCTACCTG CCACCTGGAA GGGTAAAAAG
GTCTTTATTG GCTTTGAGGG TGTTGATGCG GGCTTTTTCC TGTGGATCAA TGGCCGTAAA
GTTGGTTACA GTGTAAACAG CCGTAACCTG GCCGAGTTTG ATGTGACGGA CTTTGTAACG
CCGGGAAAGA ATACCGTTGC GGTCGAAGTA TACCAATACA CGGTTGGCAG CTACCTGGAA
GACCAGGATA TGTGGCGGCT CAGCGGTATC TTCAGAAGTG TGTATCTGTG GAATGCGCCA
CAGCAACATA TTCGTGACTT CAACGTTAAA ACTGTATTTG ATGCCGGCTA TAAGAACGCC
ACTTTATTGG TCAATGCAAA GGTGAAAAAC TACAGCCAAT CGCCTGCTGC TGCCCGTAAA
CTGGATGTAA AACTATATGA AGCTGGCAAG ACGGTGGTAG TCGCCACTGG CAGTGCCAAC
GTACCTGCTT TGCAGGCTGG TGAGGAGAAA ATAGTACAGC TCAGTATAGC GGTCAATAAT
CCGCAGAAAT GGACCGCCGA AACACCGAAT CTCTATACAA CCGTCCTGAC ATTGGGAGAG
GAGCTTTTAA GCACGCCTAC CGGTTTCAGA GAAGTAAAGA TCGAAGGCAG GTCATTGCTG
GTAAATGGTG TACCTGTAAA GCTGAAAGGT GTAAACAGGC ACGAACATTT TCCGGAAACA
GGGCATAGCC TGAATGAAGA ACAGATGATC CGTGACCTGG TGCTGATCAA ACAGGCCAAT
TGTAACCACG TCAGAACCTG TCACTATTCA GACGATCCGA GATGGTATGA ACTCTGTGAT
AAATATGGTT TATACGTCCT GGCAGAAGCC AACCTGGAAT GTCATGGCGC GATGAATGAA
TTCAACGAAG AACCGTCTAT CAAAGATGCC ATCATTGATC GTAACATTGC GAACGCGGAG
AACTTCAAAA ATCATCCTTC CGTTATTATC TGGTCGCTTG GCAATGAGTG TGGTGATGGG
GGTACTAACT TCCGTGCCGC ATTACAGGCC GTTAAACAGA TCGATCCGGA CAGACCGGTA
CATTATGAAG GCTTTGGTAT CGGTAAAAAC AATCCGGCTG ATATTGATAG CCGCATGTAC
ACCGGAACCG GTGAAGTAAA ACAGATCGCA GAAAATAAGG ATTTTACCAA ACCTTTCTAT
CTCTGTGAGT ATGCACATGC GATGTTTAAC TCCATGGGTT CAGTAGATCT CTATAATGAA
TTGTTTGACC AGTATCCTTC CCTGCTGGGT GGTTGTATCT GGGAATGGCA GGATCAGGGA
TTATGGAACA GACGTAACAG AACACACCCG ATCACTGCTT ATGGCGGTGG TTTTGGTGAA
TATCCTAACG ATAGATACTT TATCCATAAA GGAGTAATCG CTTCTGACAG ATCGCCTAAA
CCGCATTATC CTGAGTTGAA ACATGCTTAT CAATGGATCT CAGTGAAAGG TGCAGATCTG
TCTAATGGTC TGATCAGCAT CCGTAACCGC TATCAGTTCA TCAGCCTAGA TGCATTCCAT
GGCAAATGGG CTTTGCTGAA GGATGGTGTA GCTGTGGATA GTGGTCTTAT TACAGATATG
AATGTGCCGG CAGGGAATGA AAAACAAGTT AAATTGCCGC TGAAAGCGTT ACAGGCAGGT
GCAGAATATT TATTGAATGT ATCATTCTTC ACGAAGCAGG CATCTTTATG GTCGGGTAAG
AATTTCGAAA TTGCCGCCCA GCAATTACAG CTGAGCGCCG GCGCTTTTGC TACCTTTTCT
GGTATGGCAG CTGCAGCACT TCCTGTATGG AAAGCAGACG ATAGTACGAT CCAGGTAAGC
GGAAAAGGCT TTGCGCTTAC TTTCGATAAA CATAAGGGTA CTTTCTCTAA GATGACCAGC
AATGGTAAGG AGCTGCTGAA TCAAAGCGGC GGACCAAGAC TCCATCTCTG GCGTGCACCG
CACAGAATAG ATGATATGTG GGCAGATGAA GGCTGGCAGA AAGCTGGTCT GAGAGACCTG
AAATGGGAAG TGGAAGGAAC TCCGCTTGTA AAGGATTCAG CCAATGTATT GTGCATCACT
GTCAATCTCA CCGGGAAAGG AAAGAATGAT TTCGTCGTAC GTCATCGTGC TCTTTATATG
ATCAGTAACA ACGGACAGAT ACGCGCTCTG AACAATGTCA CATCCAGTGA CACAACACTT
GTCATAGCGC GTCTGGGCGT GAGGATGCTC CTGAACCCTC AGCTGGATCA GTTCTCCTTC
TATGGTCGTG GTCCGCTGGA AAACTATAGT GACAGAAAGA GCGGTTTCCC GCTTGGTATT
TATAACAGCA CAGTGGTACA ACAGCTGACG CCTTATGAAA AACCAATGGA AGCAGGTAAT
CACGAAGACG TACGTTGGGC AACGCTGAGC GCTGGTACTG GTAAAGTATT ACGGGTAAGT
AGTGTGGCTG AACCGATGCA GGTATCCGCA TTACCATATA CCGATGAAGA GATGGAACCT
ATCGGATATA AGATAGATCT TCCGCCGGTA AGCAGTACCG TACTGACCAT CAGCAGATAT
ACCCTGGGGG TGGGCTCAAA TGGTTGCGGA CCACGTCCGT TACCTCCCTA CATGGTATAT
GCAAAACCTA CTACATTCAG TTATGATCTC TGGCTGGGAC AGTCTGAATA A
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| Protein sequence | MLLLSQWLTA AAQTKETGDV PVEIENPRIT GINKEAAHAT LMPYSNLTEA LKGNRKASSR
SLLLNGTWKF NWVSWPQKRP VDFYKPTYNV SGWDTITVPS NWQVKGYGTP FYSNYNYTFQ
KNFPRVMSTP PKNFTAFTER NPVGSYRRDF TLPATWKGKK VFIGFEGVDA GFFLWINGRK
VGYSVNSRNL AEFDVTDFVT PGKNTVAVEV YQYTVGSYLE DQDMWRLSGI FRSVYLWNAP
QQHIRDFNVK TVFDAGYKNA TLLVNAKVKN YSQSPAAARK LDVKLYEAGK TVVVATGSAN
VPALQAGEEK IVQLSIAVNN PQKWTAETPN LYTTVLTLGE ELLSTPTGFR EVKIEGRSLL
VNGVPVKLKG VNRHEHFPET GHSLNEEQMI RDLVLIKQAN CNHVRTCHYS DDPRWYELCD
KYGLYVLAEA NLECHGAMNE FNEEPSIKDA IIDRNIANAE NFKNHPSVII WSLGNECGDG
GTNFRAALQA VKQIDPDRPV HYEGFGIGKN NPADIDSRMY TGTGEVKQIA ENKDFTKPFY
LCEYAHAMFN SMGSVDLYNE LFDQYPSLLG GCIWEWQDQG LWNRRNRTHP ITAYGGGFGE
YPNDRYFIHK GVIASDRSPK PHYPELKHAY QWISVKGADL SNGLISIRNR YQFISLDAFH
GKWALLKDGV AVDSGLITDM NVPAGNEKQV KLPLKALQAG AEYLLNVSFF TKQASLWSGK
NFEIAAQQLQ LSAGAFATFS GMAAAALPVW KADDSTIQVS GKGFALTFDK HKGTFSKMTS
NGKELLNQSG GPRLHLWRAP HRIDDMWADE GWQKAGLRDL KWEVEGTPLV KDSANVLCIT
VNLTGKGKND FVVRHRALYM ISNNGQIRAL NNVTSSDTTL VIARLGVRML LNPQLDQFSF
YGRGPLENYS DRKSGFPLGI YNSTVVQQLT PYEKPMEAGN HEDVRWATLS AGTGKVLRVS
SVAEPMQVSA LPYTDEEMEP IGYKIDLPPV SSTVLTISRY TLGVGSNGCG PRPLPPYMVY
AKPTTFSYDL WLGQSE
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