Gene Cpin_2339 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2339 
Symbol 
ID8358494 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2882963 
End bp2883709 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content46% 
IMG OID644964525 
Productglycosyl transferase family 2 
Protein accessionYP_003122031 
Protein GI256421378 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.231367 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.416225 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAAAAGC TCGTCATAAT TCCCACGTAC AATGAGAAGG ATAACATCCG CAACATCATT 
GACGCGGTTT TTGCCCTGCG ACAAAACTTT CATATACTGA TCGTGGACGA CGGTTCGCCC
GATGGCACCG GTAATATTGT TAGGAATTTG CAGCAGTCCC ACTCCGGCGA ATTATTCCTG
GTAGAAAGAA GTGGCAAACA GGGCTTAGGC ACCGCCTATA TCCATGGCTT CAAATGGGCT
CTTGAAAAGG GATATCAGTA CATTTTTGAA ATGGACGCTG ATTTCTCTCA CAGTCCGGCT
GACCTGAACA GGCTCTATGA TGCCTGTGCG AAGGAAGGTG GCGATGTGTC TGTCGGTTCC
CGCTATGTAA AAGGTGGTAA AACCGAAAAC TGGCCATGGG ACAGAGCTGT GCTCTCCTAC
GGTGCCTCTG TGTACGTACG TTTTGTTACC TGGATAAGGG TAAAAGACGC TACTGCCGGC
TTCGTCTGCT ATAAAAGACA GGTATTGGAA GCCATTAACC TGGATGCTAT CCGGTTTGTG
GGCTATGCCT TTCAGATAGA AATGAAATTC ACGGCCTGGA AGTTAGGTTT CAAAATCAAA
GAAGTACCTA TCACTTTCAA AGACCGTAAA GAAGGATATT CCAAAATGAG TAAAGGCATC
ATCAAAGAAG GTGTCCTGGG AGTACTCAAA ATTCAATGGG AAAGCCTGTT CCGCAAGTAT
GAAAGACGCG TAAGAAATAG CGAATAA
 
Protein sequence
MEKLVIIPTY NEKDNIRNII DAVFALRQNF HILIVDDGSP DGTGNIVRNL QQSHSGELFL 
VERSGKQGLG TAYIHGFKWA LEKGYQYIFE MDADFSHSPA DLNRLYDACA KEGGDVSVGS
RYVKGGKTEN WPWDRAVLSY GASVYVRFVT WIRVKDATAG FVCYKRQVLE AINLDAIRFV
GYAFQIEMKF TAWKLGFKIK EVPITFKDRK EGYSKMSKGI IKEGVLGVLK IQWESLFRKY
ERRVRNSE