Gene Cpin_2324 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2324 
Symbol 
ID8358479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2862542 
End bp2863435 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content49% 
IMG OID644964510 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionYP_003122016 
Protein GI256421363 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.888846 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.780097 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTAT TAATCACAGG AAGCAACGGA TTATTGGGCC AGCACCTTAT TCCCGTTTTT 
TTGGAGGATA GCCGGTATCA GGTAATAGCC AGCGGAAGAG GACCTAACCG TCTGCCGCAA
CAAACCGGAT ATATCTATGA AGCCACTAAC CTGCGGGATG CCACCAGCGT GAAGCACCTG
CTGGATAAAT ATCAGCCGGA CATCGTCATT CATGCTGCCG CTATGACCCA GGTGGATGAC
TGCGAACGTA ACAAGGATCT CTGCTGGGAT ACCAACGTAG CTGCTACCCG TTACCTGCTG
AAGGCCGCCG AAGCACATAA CACCTTCTTC ATTTTCCTGT CTACCGATTT TGTATTCGAC
GGTTTAAAGG GACCCTATGC AGAAGAGGAT GCGGTAAACC CCATCAGTTA TTATGGCTCC
AGCAAAGTGG CGGCTGAAAA CATGGTACGC GGCAGTAAAC TGCCCTGGGC CATCGTACGT
ACCGTACTGG TATATGGTAT CGCAGCCGAC TCCAAACGCA GTAACATCAT CACCTGGGTG
AAAAACAACC TGGAACAGGG CAAAAAGCTG AAGGTCGTGG ATGACCAGTG GCGAACCCCA
ACCCTCGTAC AGGATCTGGC AGTCGGATGT AAGCTGGTAG CGGACAAAAA AGCTGCCGGA
ACATTCCACA TCTCAGGTAG CGAAACGCTG ACCCCTTATC AGATGGCGGT ACAGACTGCC
GATTATTTCA AACTGAACAC ACAATTGCTT GAAAAGGTAG ATGCCAAAAG CTTCACGCAA
CCTGCCAAAC GCCCTGCTAA AACAGGTTTT GTAATAGATA AAGCCGTGAA AGAGCTGGGT
TTTGCTCCGC ATAGTTTTGA TGAAGGACTG GAGATCTTGT CAAAAGAGAT CTAG
 
Protein sequence
MKVLITGSNG LLGQHLIPVF LEDSRYQVIA SGRGPNRLPQ QTGYIYEATN LRDATSVKHL 
LDKYQPDIVI HAAAMTQVDD CERNKDLCWD TNVAATRYLL KAAEAHNTFF IFLSTDFVFD
GLKGPYAEED AVNPISYYGS SKVAAENMVR GSKLPWAIVR TVLVYGIAAD SKRSNIITWV
KNNLEQGKKL KVVDDQWRTP TLVQDLAVGC KLVADKKAAG TFHISGSETL TPYQMAVQTA
DYFKLNTQLL EKVDAKSFTQ PAKRPAKTGF VIDKAVKELG FAPHSFDEGL EILSKEI