| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2297 |
|---|
| Symbol | |
|---|
| ID | 8358452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2830002 |
|---|
| End bp | 2830805 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644964483 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003121989 |
|---|
| Protein GI | 256421336 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000676195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACC AATATTTCGG TTTAAGAAAC CAATTTTTCG GCTTGTCTAA AGAAAATATT
GGCATCGGAG AAATTGGATA TTTTTTCCGT GAAATTGGCA TTGACCAGCA ACTGTTTGCG
AGCTACTTTT GTGTCATCAG ATTTATACAG CAGCTGCGAT ATAAAAGAAT CAACAAAAGA
CTAATAAAGA CAGAATATAA GATTAACAGA AAAGATTTAA AACGAAAGAC GATGAAAAAG
ACAATTAAGG CAGGCGTAAC TACATTAGCA TTATTATTAG CAGTAGCAGT AGGCGTAAAG
GCACAAACGA AAGGAAATAG TGATTCACAG AGACCATCAT TCTCTCTGAG TGTTGGTCCG
GAAGCAGGAA TACCGGTTGG AAGTTTCAGT GACTATTATA AATGGTCCTT AGGCGGTTCC
GTACAGGCAG ATTATGCTAT CATCAAGAAG ACTTTATATG TAAACCTGAA TGCAGGATTT
GCAAATGTAT TCGCAGATGA TATCCCTGGT TTGGATGATT TGCAGTGGAT TCCCGTAAAA
GCAGGGTTAA GGTATTATCC ATTCCAGCAC AATAATCTGT ATGTAGAGGG CCAGGCCGGT
GTAAACTTTA TCACCAACGG TCCGATTGGC AACAAAACAG CGGCATTCAC CTATAGCCCA
CAGATCGGTT ATCTGATCCC ATTGGGTAAA GGAAATTACC TGGATGCTGG TGTTAAATTC
GATGGCAATT CAAAATTTGT AGATGGCGGC GATGCGGCTA ATCTGATAGG TTTGAGAGTT
GCTTACACAT TTGGCTTGAA ATAA
|
|---|
| Protein sequence | MKNQYFGLRN QFFGLSKENI GIGEIGYFFR EIGIDQQLFA SYFCVIRFIQ QLRYKRINKR
LIKTEYKINR KDLKRKTMKK TIKAGVTTLA LLLAVAVGVK AQTKGNSDSQ RPSFSLSVGP
EAGIPVGSFS DYYKWSLGGS VQADYAIIKK TLYVNLNAGF ANVFADDIPG LDDLQWIPVK
AGLRYYPFQH NNLYVEGQAG VNFITNGPIG NKTAAFTYSP QIGYLIPLGK GNYLDAGVKF
DGNSKFVDGG DAANLIGLRV AYTFGLK
|
|---|
| |