| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2220 |
|---|
| Symbol | |
|---|
| ID | 8358372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 2737521 |
|---|
| End bp | 2738381 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644964403 |
|---|
| Product | modification methylase, HemK family |
|---|
| Protein accession | YP_003121912 |
|---|
| Protein GI | 256421259 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2890] Methylase of polypeptide chain release factors |
|---|
| TIGRFAM ID | [TIGR00536] HemK family putative methylases
[TIGR03534] protein-(glutamine-N5) methyltransferase, release factor-specific |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.018393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATAC AGACCGCCTT TACACACATC GTCACATCAC TGGAACCTAT ACAGGGCCAG
CGTGAAGCAG CCAATATCGC ACATATCGTC ATGGAGTATG TAACCGGCAT GTCCAAAATG
GACAGGATCG TATACAAAGA ACGGGAACTG ACCACCGAAC AGACCTCACA GTTAACAGCT
GCGGTGAAAG CACTATTGGC GCATGAGCCT GTACAATATG TGATCGGCTC CAGCTGGTTC
TATGGTATGG AGCTTCTGGT GAATCCGCAT GTGCTGATTC CCCGTCCGGA AACAGAAGAA
CTGGTAGAAT GGATCGTACA GGATATCCGA ACTGCACAAC TCTCCCAGCC TCAGATACTC
GATATCGGCA CCGGCAGTGG CGCAATTCCG CTTGCCATCA AAAAAGAACT CCCACAAGCC
CATGTACAGG CAGTAGATGT AAGTAAAGGC GCTTTACAAA CGGCAAAGGA TAACGCTGTA
AAGCAACAAC TGGACGTTAC TTTTGAACTT GTAGACATTC TGAATAAAAC AGCATGGACA
CATTTACCGA TGTTCGATAT CATTGTAAGT AACCCTCCGT ACATCTGTCA GCGTGAAAGC
GCAGATATGC AGGAACAGGT GGTATCTTAT GAACCTTCTC TGGCCCTGTT TGTACCGGAT
GATGACGCCT TGTTGTTTTA CAGGGAAATC GGATGGATGG GAAAAGAGAA ATTAAAAAAC
GGTGGTGCAT TATATTTTGA GATTAATGAA GCATTTGGAA CAGAGACAGC GGCGTTGCTG
GAAGGTATGG GATATTTGGA AGTAGAGATT AAGAAGGATC TGTTTGGAAA GGACAGGATG
GTGAAGGGAG TGTGGAAATA A
|
|---|
| Protein sequence | MTIQTAFTHI VTSLEPIQGQ REAANIAHIV MEYVTGMSKM DRIVYKEREL TTEQTSQLTA
AVKALLAHEP VQYVIGSSWF YGMELLVNPH VLIPRPETEE LVEWIVQDIR TAQLSQPQIL
DIGTGSGAIP LAIKKELPQA HVQAVDVSKG ALQTAKDNAV KQQLDVTFEL VDILNKTAWT
HLPMFDIIVS NPPYICQRES ADMQEQVVSY EPSLALFVPD DDALLFYREI GWMGKEKLKN
GGALYFEINE AFGTETAALL EGMGYLEVEI KKDLFGKDRM VKGVWK
|
|---|
| |