Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2210 |
Symbol | |
ID | 8358362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 2730106 |
End bp | 2730996 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644964394 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_003121903 |
Protein GI | 256421250 |
COG category | [R] General function prediction only |
COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.00149437 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTCAGTTT CTACTGTTCA TCAATTTCAA ATCATTATTA ACATGGCATC ACAGAAGGTA TTAATGGTAA CAGGCGCATT TAAAGGATTC GGACTGGAAA TAGTAAAAGC AGCATTGGCT GCAGGAGACC GGGTTGTGGC AACTGTTCGT TCGGGTGCAG ATAATTTATT TACAGCGTTA GGCAAACCGG CAGCACTTAC GGTGGTGACG ATGGATGTCA CCAACGAAGA GCAGGTAAAA GAGGCTGTAA CAACAGCTCT TGAAAAAGCC GGAAAGATTG ATGTGCTGAT CAATAATGCA GGTTATGGCA TACTGGCCGG CATAGAAGAA GCGGCTGACC ACGAAGTCAA AAAACAATAT GATACAAATG TATTCGGTCT GCTAAATGTA CTGCGTTCTG TATTGCCCTC TATGCGGCAA AAAAGAAGTG GACATGTTAT TAACATCTCT TCTCTCTTTG GCTATGACTC CGTCATCGGC TGGGGCATCT ATGGTTCTAC CAAATTTGCG GTGGAAGGTA TATCAAAAGC ACTGGCAAAA GAAGTAGCCC CATTCGGCAT TAAAGTAACC GCCCTAGCTC CCGGATTGTT TACCACTGAC TTTCTTGGAA AAGGGTCTTA CCAGGAAAGC GTCAATAAGA TAGACGACTA TGCCGACACC ATAGGACAGG TGAGACAGGT GCCGGAACAG CTGCATGGAC AACAACCCGG CGATCCTTTA AAGCTGGCAC AGGTAGTCAT AAAAATAGCG CATACGGAAC ATCCGCCTTT ACACCTGCCA GTCGGTACCG ATGCAGTTGA AATGCTGAGG AACAATGCAG CAGCTATGCT GGAAGAAACG GCTCGTTGGA TAACTGTAGC TGTCAGCACA GATCATGTTG TGAAAAAATA A
|
Protein sequence | MSVSTVHQFQ IIINMASQKV LMVTGAFKGF GLEIVKAALA AGDRVVATVR SGADNLFTAL GKPAALTVVT MDVTNEEQVK EAVTTALEKA GKIDVLINNA GYGILAGIEE AADHEVKKQY DTNVFGLLNV LRSVLPSMRQ KRSGHVINIS SLFGYDSVIG WGIYGSTKFA VEGISKALAK EVAPFGIKVT ALAPGLFTTD FLGKGSYQES VNKIDDYADT IGQVRQVPEQ LHGQQPGDPL KLAQVVIKIA HTEHPPLHLP VGTDAVEMLR NNAAAMLEET ARWITVAVST DHVVKK
|
| |