Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1969 |
Symbol | |
ID | 8358120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 2402455 |
End bp | 2405625 |
Gene Length | 3171 bp |
Protein Length | 1056 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644964157 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_003121666 |
Protein GI | 256421013 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00020472 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0816221 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTGCAA ATACTTTTAT ACGCAGACCG GTTACCGCAA TAGTTATTTC TGTTGTACTG GTGCTGGTAG GTTTGCTGGC GATGACCAAC CTGCCCATCG GCCAGTACCC GGAAATTTCG CCCCCCACTG TACAGGTGAC CGGTACTTAT ATCGGTGCGG ATGCACAGAC GGTGGAGCAG ACAACAGCTA CTCCTGTGGA AGTGCAGGTG AACGGTACGC CTGGTATGAC TTACATGACC AGTAACAGTA CCAACAGTGG TGCAATGAGT CTGACCGTGA ACTTCGAAGT AGGTACCGAC ATCAATATCG CCGCACTGGA CGTACAGAAC CGTGTGGGTA TTGCGCAGCC AACCCTGCCT CAGGAGGTAC AACGTTTAGG TCTGACCGTA AGAAAGCGTA ACCCCAGTAT CCTCATGCTG GTGGCTTTAT ATTCTCCGAA TGGTACCCAT GATGTAACCT TCCTGGATAA CTATACCAAC GTTTACATCA AGGATGCGTT GCTGCGTGCG AAAGGTGTGG GTGATATCTT CACCCGTGCG GATGACTTCA GTATGCGTGT ATGGCTGAAA CCTGACAAGC TGGCCCAGAT GGGTGTAACA GCAGAAGAGG TGAGAGCTGC GATTACTGAA CAGAATGCGC AGATCTCCGC AGGTACCGTA GGTGCTCCTC CTCAGAAAAC CGGACAGACA TATGAGTATA CCATCTTTGT AAAAGGTCGT CTCGTAACAG CGGAGGAATT TGGTAATATC ATTATCAAAA CCCGTCCGGA TAACGGAGCG GTTGTATACC TGAAAGATGT TGCCCGTGTA CAACTGGGTA AATTCAGCTA TAGCAACAAC TCCTATGTGG ATGGCAAGAG AGCGTCTTAC CTGCTGGTTT ACCAGGCGCC AGGTAGTAAC GCGATCGAAA CAGCAGAAGC GGTATATGAA ACAATGGAAC AGCTGAGCAA AACTTTCCCG AAAGACGTAG CTTATGTAGT ACCATTTGAG TCTGTATCCG TGATCGAGGT GTCTATCCAC GAGGTAGTAG AAACCCTGCT GGAAGCACTC GTACTCGTGG TGATCGTGGT ATTCCTCTTC CTGCAAAGCT GGAGGGCGAC CATTATCCCG GTACTTGCTA TTCCTGTATC CATCATTGCG ACGTTCATCT TCTTTATACC ACTTGGATTT ACCATCAACA CCCTGACCCT GTTCGGTTTC GTACTGGCGA TCGGTATCGT GGTGGATGAC GCCATTGTGG TGGTGGAGGC GGTCCAGCAT AATATGGACC ATGAACAGAT GACGCCGAAG GAAGCGACTT ATGCGGCGAT GAAAGAGATC TCCGGACCTG TAATGGCGAT CGCCCTGATC CTCGCAGCGG TATTCGTACC GGTAGGATTT ATACCAGGTA TCGTGGGACG TCTGTATCAG CAGTTTGCGA TCACGATCGC GATCTCCGTA CTGATCTCTG CGTTTGTGGC ATTGTCTCTG ACGCCGGCAC TGTGTACGCT GATCCTGCGA CCTATGCACC TGGATAAGGA TTCAAAAGGT CTGAATAAAT TCTTCTTCAA GTTCAACGTA TGGTTTGGTC ATGTAACCAG CCGTTATTCA TTGGGTGTGA AGAAGAGTAT CCGTTGGTCG CGTTATGTGA TCATACTGCT GCTTTGTATT ATGGTAGGTA CCTTATTCCT CTTCAGAGGT AAGCCGACAG GCTTTATTCC GACAGAGGAT GATGGTCGTA TATATATCAC TTTTGACCTG CCGGAATCAT CTTCCACTGA GCGGACGATT GCTGTCATGA CAGAAATGAT GCATACACTG GATAGCGTAA AAGCGATCGG TCACTATGCA GCATTGGGTG GTCTGAACGT AGTAAGTTTC GCGACCAAAT CAAACAGTGG TACGATCTTC TGTCAGCTGA AACCATGGGA TGAACGTAAG GACAAATCTC AGCAGATCTT TGCGCTGGTA GGGCAACTCC AGGCAAAACT CTCCAGGTTT AAGGAAGCCA ATGTGGTGGT AATTCCGCCT CCGGCGATTC CTGGTCTGGG TTCTACAGCA GGTTTCTCCT TCATTCTTCA GCAGAAGAGT GGTGGTGGCG ACATCAAAGA ATTTGAAGGT GTACTTCAGA AATTCACGAT GGCGATCAAC CAGCGTCCTG AAATCGCAAG AGCGTTCTCC TTCTTTACCG CACGTACTCC TGGTTACCAA CTGGAGATAG ACCGTGAAAA GGCGAAGAAG ATGGGCGTAC AGATATCGTC TATTGCCACT GCATTGCAGA CCTATCTGGG TAGTGCTTAT GTGAATGACT TTACGGTATA CGGCCGTAAC TTCCGTGTGG TAACGCAGGC GGATTCCACT TACCGTGGCG ATATCAAAGA TCTGTCACAA TATTTTGTGC GCAACTCTGC TGGTACGATG GTGCCATTGA GTGCGCTGAC TTCCTATAAG GTGACGGAAA GTGCGCCGGT TATCTCTCAC TATAACCTGT TCCGTTCTGC GGAAATAAAC GGTAGCCCTG CTCCTGGTTA TAGTAGTGGT GACGCGATCA AGGCATTGCA GGAAGTAGCT GCACAGGTAT TACCGGAAGG TTATGGATAT GAGTTCTCCG GTTTGAGCCG TGAGGAGTTA TTATCAGGAT CGAAGACTGT TTACATCTTC GCCCTGTCTA TCATCTTCGT ATTCCTCTTC CTGGCAGCTC TTTATGAAAG CTGGTCGGTA CCGTTCTCTG TACTGCTGGC CGTACCTATC GGGGCCTTTG GTGCGATCCT GACACTGACT TTCCTTCCTG CCATTACGAA TAACGTTTAT GCGCAGATTG GTCTGATCAC CCTGATTGGT CTCTCGGCAA AGAATGCGAT CCTGATCGTG GAGTTTGCAA AAGAGCGTGT GGACAGGGGG ATGGAACTGG TCACGGCGAC TGTGGAAGCG GCCAAGCTGC GTCTGCGTCC GATCATCATG ACTTCCCTTG CGTTCCTGTT AGGTATCATG CCGCTGGTAA TATCCAGTGG TGCGGGTGCT GAATCCCGTA AAACAATGGG ATGGACCGTA TTGGGTGGTA TGTTCACAGC GACCTTCCTG GCGATCTTTA TCGTACCGGT GCTGTATGTG GTAATTACCC GTCTGGCATA TGGAAAGGAT AAACTCAAAC AAATGCAGGA AAATCACAAA GCGATGCAAC ACGAATTATA A
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Protein sequence | MIANTFIRRP VTAIVISVVL VLVGLLAMTN LPIGQYPEIS PPTVQVTGTY IGADAQTVEQ TTATPVEVQV NGTPGMTYMT SNSTNSGAMS LTVNFEVGTD INIAALDVQN RVGIAQPTLP QEVQRLGLTV RKRNPSILML VALYSPNGTH DVTFLDNYTN VYIKDALLRA KGVGDIFTRA DDFSMRVWLK PDKLAQMGVT AEEVRAAITE QNAQISAGTV GAPPQKTGQT YEYTIFVKGR LVTAEEFGNI IIKTRPDNGA VVYLKDVARV QLGKFSYSNN SYVDGKRASY LLVYQAPGSN AIETAEAVYE TMEQLSKTFP KDVAYVVPFE SVSVIEVSIH EVVETLLEAL VLVVIVVFLF LQSWRATIIP VLAIPVSIIA TFIFFIPLGF TINTLTLFGF VLAIGIVVDD AIVVVEAVQH NMDHEQMTPK EATYAAMKEI SGPVMAIALI LAAVFVPVGF IPGIVGRLYQ QFAITIAISV LISAFVALSL TPALCTLILR PMHLDKDSKG LNKFFFKFNV WFGHVTSRYS LGVKKSIRWS RYVIILLLCI MVGTLFLFRG KPTGFIPTED DGRIYITFDL PESSSTERTI AVMTEMMHTL DSVKAIGHYA ALGGLNVVSF ATKSNSGTIF CQLKPWDERK DKSQQIFALV GQLQAKLSRF KEANVVVIPP PAIPGLGSTA GFSFILQQKS GGGDIKEFEG VLQKFTMAIN QRPEIARAFS FFTARTPGYQ LEIDREKAKK MGVQISSIAT ALQTYLGSAY VNDFTVYGRN FRVVTQADST YRGDIKDLSQ YFVRNSAGTM VPLSALTSYK VTESAPVISH YNLFRSAEIN GSPAPGYSSG DAIKALQEVA AQVLPEGYGY EFSGLSREEL LSGSKTVYIF ALSIIFVFLF LAALYESWSV PFSVLLAVPI GAFGAILTLT FLPAITNNVY AQIGLITLIG LSAKNAILIV EFAKERVDRG MELVTATVEA AKLRLRPIIM TSLAFLLGIM PLVISSGAGA ESRKTMGWTV LGGMFTATFL AIFIVPVLYV VITRLAYGKD KLKQMQENHK AMQHEL
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