Gene Cpin_1968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1968 
Symbol 
ID8358119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2401279 
End bp2402418 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content48% 
IMG OID644964156 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_003121665 
Protein GI256421012 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000223491 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.235934 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAA AGCAACACAT TCTCCTCATT GGCGCTACAG GCTTATTTTA CCTGGCTTCC 
TGTAAAGGCC CGGCTCAGAA AGCAGCCATG GTATTGCCTC CTACACCGGT AAGCGTAGTG
CCGGCAGTTA CTGGTACTGC TATTTACTAC GATAAATATC CCGCTACAGT GGTAGCACTG
AACCAGGTTG AACTGCGTGC ACAGGTGTCA GGATATATTA CCGGCATTTT CTTTAAAGAA
GGTGAAGTGG TACAGAAAGG AAAACCGCTC TATGAAATAG ACCGTCGTAA GTATGAAGCT
ACTTATCGCC AGGCAGAAGC TAGTATTGCC CAGGCAAAAG CGAACCTTAC GAAAGCACAA
AAAGACGCAG ACCGTTATCA TAAACTGGCA GAGCAGGACG CGATTGCCCG TCAGACGCTG
GACAATGCAG ACGCTGCACT GGACGTGAGC CGTAGCCAGC TCGCCGCTGC GGAAGCTTCT
TTACTGTCTG CCCGCACAGA TCTGGACTAT GCTGTAATTA AAGCTCCTTT TACCGGCCGT
ATCGGTATCT CCCAGGTGAA ACTGGGTGCA CAGATCGGTG CCGGAACGAC TTTACTGAAT
ACTATTTCCT CAGAGAATCC GATCGCTGTT GATTTCGTGG TGAATGAAAA TGATATCCCA
CGTTTCTCCG GTATGCAGGG TAAAGCGGTA ACTCCGGGTG ATTCTACTTT CCGTCTGCAA
TTGCCTAACG GACAGGCTTA TACTGAACCG GGTCGTCTGA CAGTAGTCGA TCGTGGTGTA
GATAACCAGA CAGCTACTAT CAAGGTGCGT ATTGAATTCA ACAACCCGAA GAATGAGCTG
AAAGAAGGTA TGAGTGGTGT GATGAATGTA CTGAACGATC AGTCAGGCGA TCGCGTAATC
ATTCCTTACA AAGCAGTGGT TGAACAGATG GGTGAATTTT TCGTATTTGT TGCGAAAGAT
ACTGTTGCAG AACAGCGTAA AATACATCTG GGCCCTCGTC TGAGAGAAAG CATCGTCGTA
ATGGACGGTG TTAAACAAGG CGAGCTGGTG ATTGCAGAAG GTATACAGCG TTTACGCGAT
GGTGGTAAGA TTGATACCAC TACCGTAAAG AAAGCGCCGG ATGCCGCAGC TAAGAAATAG
 
Protein sequence
MKTKQHILLI GATGLFYLAS CKGPAQKAAM VLPPTPVSVV PAVTGTAIYY DKYPATVVAL 
NQVELRAQVS GYITGIFFKE GEVVQKGKPL YEIDRRKYEA TYRQAEASIA QAKANLTKAQ
KDADRYHKLA EQDAIARQTL DNADAALDVS RSQLAAAEAS LLSARTDLDY AVIKAPFTGR
IGISQVKLGA QIGAGTTLLN TISSENPIAV DFVVNENDIP RFSGMQGKAV TPGDSTFRLQ
LPNGQAYTEP GRLTVVDRGV DNQTATIKVR IEFNNPKNEL KEGMSGVMNV LNDQSGDRVI
IPYKAVVEQM GEFFVFVAKD TVAEQRKIHL GPRLRESIVV MDGVKQGELV IAEGIQRLRD
GGKIDTTTVK KAPDAAAKK