Gene Cpin_1919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1919 
Symbol 
ID8358070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2343000 
End bp2343905 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content46% 
IMG OID644964107 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_003121616 
Protein GI256420963 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01122] branched-chain amino acid aminotransferase, group I 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.451935 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATAGCT ATTACAACGA GAACACCATT CTTTACATTA ACGGGGAGTA TAAGAAAGCT 
ACCGCGGCCA CTACAGATTT GTATGGTCAG TCATTACATT ATGGGTATGC TGTATTTGAA
GGCATTCGTG CTTATAAAAC AGCTGATGGA ACTGTGAAGA TTTTCAAAGC AAAAGAACAC
TTCGACAGAT TTAAGCGTTC CTGCGAATTA ATACACATGC CGTATCCATT TGATAATGAC
GAGCTGGTGA AAGCATGTTA CAAAGTGCTG GAACTGAATA ATATGGAAGA AGCGTACATC
CGTCCGCTCG CTTTCTGCCC TCCGAACATG ACACTGAAGG CTGCTGCCGA AACACATGTA
CTGATCTGTG CATGGGAATG GGGAGCATAC CTGGGCGAAA AACTGCTGCG TGTGATGACC
TCATCTTACC AGCGCCCAAA TCCAAAAGCA TTCAAGATCG AGTCTAAAAC AGCTGGTCTG
TATGTAAACT CTATCCTGGC TTCTCAGGAA GCAAAGGAAC AGGGTTACGA CGAAGCGCTG
CTCCTGGATA TCAACGGCTT TGTAGCTGAA GGTCCCGGCG CTAACCTGTT CTTCGAAAAA
GACGGTAAGA TCTTCACACC TCCTCCAGGC AACATCCTGC CAGGTATTAC CCGTGCTACC
GTGATCGAAC TGTGTCATGA ACTGGGTATT CCGCTGGAAG AGAAACTCTT TACTACTGAC
GAACTGAAAA CAGCTGACTG CGTATTCTAT TGCGGTACTG CTGCTGAAGT AGTAGGATGG
GATTCACTCG ATGGCCAGAC TTTTAACAAG CCATGGGCTA CTTCTCTGGG TAAACTGCTG
CAGCAGGCTT ACAAAGCGAA AGTACTTGAG AAAGAATTCG ATCGCGCTGC GGTTCCGGTC
GCGTAA
 
Protein sequence
MYSYYNENTI LYINGEYKKA TAATTDLYGQ SLHYGYAVFE GIRAYKTADG TVKIFKAKEH 
FDRFKRSCEL IHMPYPFDND ELVKACYKVL ELNNMEEAYI RPLAFCPPNM TLKAAAETHV
LICAWEWGAY LGEKLLRVMT SSYQRPNPKA FKIESKTAGL YVNSILASQE AKEQGYDEAL
LLDINGFVAE GPGANLFFEK DGKIFTPPPG NILPGITRAT VIELCHELGI PLEEKLFTTD
ELKTADCVFY CGTAAEVVGW DSLDGQTFNK PWATSLGKLL QQAYKAKVLE KEFDRAAVPV
A