Gene Cpin_1907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1907 
Symbol 
ID8358058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2329217 
End bp2329768 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content42% 
IMG OID644964095 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003121604 
Protein GI256420951 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAATCCG CGTTCACATA TACGGAATCT GAGCTGGTGC AGGGGCTAAA GGCCAAAGAC 
CAGAAGGTAT TCGGCTACCT GTATGACCGA TATTCGCCTG CTTTGTACGG GGTGGCACTT
AAAGTGCTCA ACGACGAAAG CAATGCGAAT GATGTATTGC AGGAAGTGTT CCTTAAAATC
TGGCGTAATA TTGACCGGTA CGATGAAAGC AAAGGACGTC TGTTCACATG GATGCTCAAT
ATTACACGTA ACTCCGCAAT TGATACGCTC CGCTCGAAGG CACATAAAAT GGATCAGAAA
ATCCAAGACA TTGGCGATGA CGTACATTTA TATACAGGTA ATTTAACTGT ACACCCATCC
GTTGACCATC TTGGACTTTC AAAGGTTCTT GAAAAATTAA CTAAGGAACA ACGAATCATC
ATTGATTTAG CGTACTATAA GGGTTGCACC CAGGAAGAAA TTTCCAAGGT GCTGGAAATT
CCTTTGGGTA CCGTAAAAAC AAGGATGAGG AACGCAATCA TTCAATTAAG AAACTTGTTA
AAATTAGTAT AA
 
Protein sequence
MESAFTYTES ELVQGLKAKD QKVFGYLYDR YSPALYGVAL KVLNDESNAN DVLQEVFLKI 
WRNIDRYDES KGRLFTWMLN ITRNSAIDTL RSKAHKMDQK IQDIGDDVHL YTGNLTVHPS
VDHLGLSKVL EKLTKEQRII IDLAYYKGCT QEEISKVLEI PLGTVKTRMR NAIIQLRNLL
KLV