| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1860 |
|---|
| Symbol | |
|---|
| ID | 8358011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2265666 |
|---|
| End bp | 2266115 |
|---|
| Gene Length | 450 bp |
|---|
| Protein Length | 149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644964048 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_003121557 |
|---|
| Protein GI | 256420904 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0824] Predicted thioesterase |
|---|
| TIGRFAM ID | [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.484862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTTG TATTGACCGA GCGTGCAAAT ATACTTGTGA AGTTCAATGA AGCGGACCCT
TTGGGAATCG TATGGCATGG ACATTATGTT CGCTATTTTG AAGATGGAAG GGAAGCTTTC
GGTGAAAAAT ACGGGCTGCG ATACCTCGAT ATTTATAAGG AAGGATACAC CGTTCCGGTT
GTGAATGTAC AATGTAACTA CAAACGCTCG CTCCGTTACG GAGACCGTGT GATTGTGGAA
ACTACCTATG TAAATACAGC TGCTGCAAAA ATCAGGTTCG AGTATAAACT CTACAATTTT
GCAACAGGCG AACTGGTTGC TGATGGTAGT TCAGTGCAGG TATTCCTGGA TGTACCCACA
TCTTCCCTGC AACTGACCAT TCCTCCATTT TTTGAAAAAT GGAAAGCCGA ACACGGACAG
GTACTTCCTC CTAACAATGA GAAAAGATGA
|
|---|
| Protein sequence | MSLVLTERAN ILVKFNEADP LGIVWHGHYV RYFEDGREAF GEKYGLRYLD IYKEGYTVPV
VNVQCNYKRS LRYGDRVIVE TTYVNTAAAK IRFEYKLYNF ATGELVADGS SVQVFLDVPT
SSLQLTIPPF FEKWKAEHGQ VLPPNNEKR
|
|---|
| |