| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1836 |
|---|
| Symbol | |
|---|
| ID | 8357987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2239705 |
|---|
| End bp | 2241279 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644964024 |
|---|
| Product | peptidase M56 BlaR1 |
|---|
| Protein accession | YP_003121533 |
|---|
| Protein GI | 256420880 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTATTT ATCTGCTTAA AGCCAACATA GCGCTTGTTT TGTTTTACCT GGCTTATCGC
TTCGGTCTGA GGCGTCTGAC CTTCTACTCG TTGAACCGCT TTTTCCTGAT TGGCGGTATC
CTGTGTGCCA CGGTGGGACC ACTGATCGAT CCCTCTGTAT TTATACACAG GCATCATGAG
CTGAATGTAG TGGCAGAGAC TTATATGCTT GACCTGTCAG CCCTGCAGCG GCATCCTTCA
GAGCCCTTTA TCAATACCCT GGTAAAGTAT GTGTTCTGGC TTGGAGTGAT CGTTATGACC
ATCCGGCTAG CCATGCAGCT TTTCTCTTTA TGGAAACTGC ATCATCAGAC CCGGAGAACC
GTTTTCGGAG ATGAATCACT GCGTATTATG GAGCGGAAGG CGAATCCGTT TTCCTTCATG
CGTAACATCT ATATTAACCC TTCCCTGCAC ACGCCGGAGG AATTCTCTTC CATCATCCAG
CATGAAAAGG TGCATGTACG GCAATGGCAT ACACTGGATG TACTGCTGGG GGAACTGAAC
AAGATCTTCT ACTGGTTCAA TCCCGGCGCC TGGTTAATGT CTATTGCTAT CCGTGAGAAC
CTGGAGTTTA TCACTGACAG GAGCATTCTC CGACAGGGAA TGGACGTAAA ATCTTATCAA
TACAGTCTTT TAAAAGTAAG TGGGATCCCA TATGCGACGG CCATCGCAAA CAATTTCAAT
TTTTCACACT TAAAACAAAG GATCATGATG ATGAATAAGA AAAGATCATC CCGCTATCAT
TTACTGCGTT ATGTAGTATT GGGCGCTGTG ATGGGGATCG CCGTACTTTC CCTGAATTTC
TCCAGTGCAA TTGCTAAAGC AGAGACGTCT GCACGTAAAC TGGCAAACGC ATTCCAGGAA
GATACATCGA AAGTGAAGGT TCCACCACCA CCAGCACCAT TACCTCCCCC ACCTCCGCCA
CCGCCAGCTC CTCCGGTAAA GGTGAAAGGT AAAGGAGCGA AAGTGCCACC TCCGCCTCCA
CCGGCACCGC CGGTTCCTGC TGCTCCACAG GCAGCTCCCG CACCTGCTGC AGCTGCTGCA
CCAAGTCCGG AAGGAGAAGA ACTGAGACTA AGCGTTGCGG AAAAGCCGGA TGCTGCAGAG
AAATCTAAAA TTACCATCAG AGGCGGCGCG GACGGACAGG GAAAACCGCT TTATGTGGTA
GATGATGTCC TTATCGGTAA TAACCTGCCA GAGGGTATGT TGGATCCTAT GGCAATCAGT
TCCATACATG TGCTGAAAGG TGAATCAGCT ACCGCTGTTT ATGGGGATGC TGGTATAGAC
GGTGTAGTGA AGGTTTACAC CAAAGCTTAT GTTGGAACTT CACTCGTAAA ACATGATGTG
CTCATGCCTG CTAAACCAGG CACTACTGCT GCCACGCCTA CAACAATAAA GTTTGTGCCG
GCTGGTGAAA AGAAAAATGA TGAGGTGATC ACCGTTATTA GCTATAAAGA TGGTAATAGT
ACCCATGCTA TAACAGCAGG TAATAATACT AATGCAAATG CTAAAACAGA CGCTAAGTCT
GAAGACAAAA AGTAA
|
|---|
| Protein sequence | MLIYLLKANI ALVLFYLAYR FGLRRLTFYS LNRFFLIGGI LCATVGPLID PSVFIHRHHE
LNVVAETYML DLSALQRHPS EPFINTLVKY VFWLGVIVMT IRLAMQLFSL WKLHHQTRRT
VFGDESLRIM ERKANPFSFM RNIYINPSLH TPEEFSSIIQ HEKVHVRQWH TLDVLLGELN
KIFYWFNPGA WLMSIAIREN LEFITDRSIL RQGMDVKSYQ YSLLKVSGIP YATAIANNFN
FSHLKQRIMM MNKKRSSRYH LLRYVVLGAV MGIAVLSLNF SSAIAKAETS ARKLANAFQE
DTSKVKVPPP PAPLPPPPPP PPAPPVKVKG KGAKVPPPPP PAPPVPAAPQ AAPAPAAAAA
PSPEGEELRL SVAEKPDAAE KSKITIRGGA DGQGKPLYVV DDVLIGNNLP EGMLDPMAIS
SIHVLKGESA TAVYGDAGID GVVKVYTKAY VGTSLVKHDV LMPAKPGTTA ATPTTIKFVP
AGEKKNDEVI TVISYKDGNS THAITAGNNT NANAKTDAKS EDKK
|
|---|
| |