| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1798 |
|---|
| Symbol | |
|---|
| ID | 8357949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2181816 |
|---|
| End bp | 2183672 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644963986 |
|---|
| Product | Beta-N-acetylhexosaminidase |
|---|
| Protein accession | YP_003121495 |
|---|
| Protein GI | 256420842 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAG CATTGTTTTG CCTGGCCTTA TGCTGCCTTG TAGTGCAGGC ATTTGCCCAG
CGGTTTAACA TTATACCTGC GCCGGTTGAG CTATATGAAC AACCGGGAGA ATTCATCATT
GATAAAAGTG TTGTCATCGT TGCACCTTCG GCAGGTACAC AGTTAGATAG TACACTGCAA
TGGTTTAGCG ACCGTATTGC GACAGCTACT GGCTTCCATC TGAAAACTGC GAAAACGGGG
ACGAAGGTGC TGCGTATCGT GTTGAGTCAG GCAGATAAGC AGGAAGGGTA TAAGCTGAAG
GTTACTCCTA CAGAGATTAC CCTGAAAGCT CCAAGCCCTG CCGGTGTATT TTATGGTTTA
CAGACATTGT TGCAATTGTT ACCACCGGAT ATTGAAAGCA GTCAACCCAT TGAACGTATC
TGGTCAGTAC CCTGTACAGA TATCATTGAT TATCCCCGTT TTGGCTGGAG AGGCTTGATG
TTGGACGTCA GCAGGCATTT CTATACCAAA GAGGAAGTGA AGCGCTATAT CGATGAAATG
GCCAGGTACA AATACAATAT TTTCCACTGG CACCTCAGTG ATGACAATGG CTGGCGTATT
GAGATCAAAA GTCTGCCGGA ACTGACAAAG GTGGGTGCAT GGCGGGTGGC TCGTACCGGC
AGATGGGGGA CGTTTGAATC TCCGCAACCA GGAGAGCCGG CAAAAGAGGG TGGTTTTTAT
ACCCAGGAAG ACATAAAGGA AATACTGGCA TATGCGCAGG CCCGCTATAT CACCGTTCTG
CCGGAAATAG ATGTACCGGC GCATAGTCTG GCGATGATCG CAGCTTATCC GAATCTGTCC
TGTACACAAT TGCACTATAA CGTCAATCCG GGCAGTCATT TTTACAAAAA AGAAGATAAT
GCGCTTTGTA TCGGCAATGA TTCGGTATAT CTCGTACTTG ATAAAGTATT TACAGAGATC
GCGGCACTAT TCCCTTTCAA TTATATCCAT GTGGGAGGAG ATGAGGCTTA TAAAGGCTTC
TGGGATAATT GTCCGAAATG TCGCAAAAGA ATGGAGCAGG AAAACCTGAA AAATGTGGAT
GAACTGCAAA GCTATTTTGT AAAACGGTTG GAAAAGATAC TCCGGAGTAA AGGCAAAAAA
CTCATTGGAT GGGACGAGAT CCTGGAAGGC GGATTAGCGC CGGAGGCGAC CGTTATGAGC
TGGAGAGGGA TGAAAGGAGG GATAGAAGCA GCTAAGATGA ATCACCATGT GGTCATGAGC
CCCTGGGAGT ATTGTTACCT GGACCTCTAC CAGGGAGATC CTGCTGCGGA GCCGCCTACC
TATGGTATGT GCAGACTGAG TGATTCATAC AACTATGATC CGGTACCGGA TGGTGTGGAT
GAAAAGTATA TTCTCGGCGG ACAGGGAAAT CTCTGGACGG AATCCATCGC TAACTATCGT
CATATTCAGT ATATGACCTG GCCACGCGCA TTGGCATTGT CAGAGGTTTA CTGGAGTCCT
AAAGCCAAAC GTAACTGGAA TAAGTTTGTG CAGAGAATGG AAGTGCATTT TGTAAGATTT
GACACTGCGC ATATTAAATA CTCCCGTAGC GCCTGGAACG CTATTGTAAA ACCGTCAAAA
GATAATAACG GACAACTGTC CGTGCAACTG TCCACCGAAA TTAAAGGACT GGATATTTAC
TACACATTTG ATAATTCTGA TCCGGATAAT ATGTATCCGC AATACACCGG ACAGCCCCTG
GTATTTCCGG CAGGCGCAGC AAACCTGAGT ATCGTTACTT ACCACGATGG GAAAAAGGTA
GGAGAACTAC TGACCGTTGG TAAAGAAGAA TTGTTGAAAC GGCTAAAAGA TAACTGA
|
|---|
| Protein sequence | MKKALFCLAL CCLVVQAFAQ RFNIIPAPVE LYEQPGEFII DKSVVIVAPS AGTQLDSTLQ
WFSDRIATAT GFHLKTAKTG TKVLRIVLSQ ADKQEGYKLK VTPTEITLKA PSPAGVFYGL
QTLLQLLPPD IESSQPIERI WSVPCTDIID YPRFGWRGLM LDVSRHFYTK EEVKRYIDEM
ARYKYNIFHW HLSDDNGWRI EIKSLPELTK VGAWRVARTG RWGTFESPQP GEPAKEGGFY
TQEDIKEILA YAQARYITVL PEIDVPAHSL AMIAAYPNLS CTQLHYNVNP GSHFYKKEDN
ALCIGNDSVY LVLDKVFTEI AALFPFNYIH VGGDEAYKGF WDNCPKCRKR MEQENLKNVD
ELQSYFVKRL EKILRSKGKK LIGWDEILEG GLAPEATVMS WRGMKGGIEA AKMNHHVVMS
PWEYCYLDLY QGDPAAEPPT YGMCRLSDSY NYDPVPDGVD EKYILGGQGN LWTESIANYR
HIQYMTWPRA LALSEVYWSP KAKRNWNKFV QRMEVHFVRF DTAHIKYSRS AWNAIVKPSK
DNNGQLSVQL STEIKGLDIY YTFDNSDPDN MYPQYTGQPL VFPAGAANLS IVTYHDGKKV
GELLTVGKEE LLKRLKDN
|
|---|
| |