Gene Cpin_1773 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1773 
Symbol 
ID8357924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2145767 
End bp2147074 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content44% 
IMG OID644963961 
Productouter membrane efflux protein 
Protein accessionYP_003121470 
Protein GI256420817 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTACCTT TTATGTTTTT GACAATGTGC GTAACGGCAC AACAACCTCA TGACACTACC 
AAACCGTTAC ATCTTACACT GGTGCAGATA TGGGAACAGG CAGAACTGAA CAACAAAAGG
ATAGCTATGT CCCGTTTGCG CGTGGAAAGT AGTGAAGAAG CATTGAAAGA TGCGAAGGCG
GAACGTCTGC CTGAAATCAA TGCTGCCGGC GCTTATGCCC GTGTGACAAA TATGCCTGTC
TACGAAGATG GCCTCTTTCA TACACCAGAT CAGTTTCCCG TATTGCACAA CTTTTACAAA
GTAGGCGGAG AAGCTTATTT CAACATTTAT AATGGCAATA AAACGAATCT TGAAATTAAG
AAGGGAGCAA CGGAACATGC AATAGCAGAA GAACAAAAGA ACCTGACCGT ATCAGAAGTA
AAATTCAATG CGGCGGTCTG TTACCTGGAT CTGGCACGCA GTTGCCGGTT TAAAGAACTG
ATAGCAAAGG ACATTGAAGA ACAGGAAAGG CAACTCGTCC ACATCCAGGA ATTACAGAAA
AATGGCGTTG TGCTGAAAAG CGATGTACTG AGAGCTACAC TGAAATTATC CCGTCAGAAG
ATGGGCATGA TACAGATAGA AAATGACATC GCTATCGCAA GTCAGAAACT GGATTTAATG
ATCGGCATAG ATGAACATGT ACTGATTCAG CCGGATAGCT CAATGACAAC AGATCTTGCT
GTACCGGGTA CTTACGATGA CTACCTGGTA GCTGCCGCGG AACATGCGCA TGAATACAGG
ATTTCAGAAC GGGAAACCGC ATTGAAAGAA CTGTCACTGA AACAGGTGAA AGCGAATGTC
GCCCCCAGGA TAGGTCTGTT TGCAGAGTAC AACTGGTCCT ACCCGCAGAT CCAGTTTTAT
CCTTATGGCG ACGCCGTGTA CGGATTAGGT ATGTATGGTG TGAAAGCTTC TTTCCCGATA
TCCTCCTTCT ATCACAATAA ACACAAGGAA AAAGCAGCAA AACTGCAACT GGAAAGACAG
GAAGTTGAGC ATAAAGAAAC AGGCGACGTT GTAAGACAAC AGGTCAACGA AGCTTACCTG
CGTTATAAGG AAGCGCTTAC CCGTATTGAT GTGGCAGAAA CCAATATCAA ACAGGCAACA
GAGAACCTCA GGATTGTAAA TAATACCTAT TTCAACCAGC TCTCCCTTGT TACAGATCTT
TTAGATGCAG ATACACAAAT GCTGCAAACA AAATTTGACC TGGTATCAGC CAATATCGCT
GCCCGCGTCA GATATTACCA GTTACAAAAA GTTATAGGCA ATTTATAA
 
Protein sequence
MLPFMFLTMC VTAQQPHDTT KPLHLTLVQI WEQAELNNKR IAMSRLRVES SEEALKDAKA 
ERLPEINAAG AYARVTNMPV YEDGLFHTPD QFPVLHNFYK VGGEAYFNIY NGNKTNLEIK
KGATEHAIAE EQKNLTVSEV KFNAAVCYLD LARSCRFKEL IAKDIEEQER QLVHIQELQK
NGVVLKSDVL RATLKLSRQK MGMIQIENDI AIASQKLDLM IGIDEHVLIQ PDSSMTTDLA
VPGTYDDYLV AAAEHAHEYR ISERETALKE LSLKQVKANV APRIGLFAEY NWSYPQIQFY
PYGDAVYGLG MYGVKASFPI SSFYHNKHKE KAAKLQLERQ EVEHKETGDV VRQQVNEAYL
RYKEALTRID VAETNIKQAT ENLRIVNNTY FNQLSLVTDL LDADTQMLQT KFDLVSANIA
ARVRYYQLQK VIGNL