| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1710 |
|---|
| Symbol | |
|---|
| ID | 8357859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2051104 |
|---|
| End bp | 2054913 |
|---|
| Gene Length | 3810 bp |
|---|
| Protein Length | 1269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644963896 |
|---|
| Product | DNA-directed RNA polymerase, beta subunit |
|---|
| Protein accession | YP_003121407 |
|---|
| Protein GI | 256420754 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.845619 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCTAA AAAAAGCCCA AGCAAACGAA AGAGTAAATT TTGGAAAGAT CAAACAAGTT
ACTGAGACAC CGGATCTGTT GGCTATCCAA ATCCAATCTT TCAAGGATTT CTTCCAGTTA
GAAACCACAC CAGACAAACG TAACAATGAA GGCCTTTTTA AAGTATTCAA GGAGAACTTC
CCGATTACAG ATACCCGCAA TATCTTCAAT CTGGAGTTTC TGGACTACTT TGTAGACCCT
CCGCGATATA CGATAGAGGA ATGTATTGAA CGTGGGCTTA CCTATTCTGT ACCGCTGAAG
GCTAAATTGC GCCTGAGCTG TAACGATGAG GAACACGTTG ACTTCCAGAC GATTGTGCAG
GATGTATTCC TCGGGAATAT ACCCTACATG ACGCCTAGAG GTACATTCGT GATTAACGGC
GCAGAGCGCG TGGTAGTATC GCAGCTCCAC CGTTCTCCTG GTGTATTCTT CGGACAATCC
ATACATCCAA ACGGTACGAA AATCTACTCT GCAAGGGTGA TTCCGTTCAA AGGGGCCTGG
ATGGAGTTTG CAACCGACAT TAACAATGTA ATGTACGCTT ACATCGACCG TAAGAAGAAG
TTCCCTGTAA CTACCCTTCT GCGTGCGATC GGCTACGAGA CAGATAAAGA TATCCTCCAG
CTCTTCGGAA TGGCTGACGA GGTGAAAGCA GATAAGAAGA GCCTGGAAAA ATACGCCGGT
AAGAAGCTGG GTGCACGTGT ACTCAGAAGC TGGGTGGAAG ATTTCGTAGA TGAAGATACC
GGTGAGGTGG TGAGCATTGA ACGTAATGAG ATCATGCTTG AGCGTGATAG TATCCTCGAT
GAAGCGAATA TCGAAACCAT CGTGGATATG GGCGTGAAAA GTGTGTTCGT GCAGAAAGAA
GAGGTGAGCG GCGACTTCTC AATTATCTAC AATACTTTAA ATAAAGATAC ATCTAACTCC
GAACTGGAAG CTGTTCAGCA CATCTACCGC CAATTGCGTG GTGCCGATGC GCCGGATGAT
GAAACAGCAA GGGGTATCAT CGATAAATTG TTCTTCTCTG ACAAGCGTTA TGACCTCGGG
GATGTTGGTC GTTATAAGAT CAACAGAAAA CTCGGTCTGC CTACGCCTCT CAACATGAAA
GTGTTGACCA AAGAAGACAT CATCGCGATC ATTAAGTACC TGGTACAGCT CACCAACAGT
AAAGCGGAGA TCGATGATAT CGATCACCTG AGTAACCGTA GGGTGCGTAC CGTGGGCGAA
CAGTTATATG CGCAGTTTGG TGTTGGTCTG GCTCGTATGG CCCGTACCAT CCGTGAGAGA
ATGAACGTTC GCGATAACGA GGTATTTACG CCGGTAGATC TGATCAATGC AAGAACACTT
TCTTCTGTAA TCAACTCCTT CTTCGGTACC AGCCAGCTGA GCCAGTTCCT GGATCAGACT
AACCCGCTGT CTGAGATCAC GCACAAGCGT CGTATCTCCG CCCTCGGTCC CGGCGGTCTT
AGCCGTGAAA GAGCAGGTTT CGAGGTGCGT GACGTACACT ATAGCCACTA CGGCCGTCTC
TGTACGATCG AAACACCGGA AGGTCCGAAC ATCGGTCTGA TCTCTACTCT TTGCGTACAC
GCGAAAGTAA ACGACATGGG CTTTATCGAA ACACCTTACC GTAAGGTGAA TGAAGGTAAA
GTAGACATGG ATAATGTACG ATTCCTGAGC GCTGAAGAAG AAGATTCCGT GAAGATCGCA
CAGGCGAACG CACCACTCGA TGAAGAAGGT CACTTTGTAA ATGATAAGGT GAAATCCCGT
GAAACCGGTG ACTTCCCTAT CCTGGACAGA GAAGAAGTGG AATACATGGA CGTTGCACCT
AACCAGATCG TAGGTCTGAG TGCTTCCCTG ATTCCGTTCC TCGAGCATGA TGACGCCAAC
CGTGCGTTGA TGGGATCGAA CATGCAACGT CAGGCAGTAC CATTGATCAA CCCACAGGTG
CCTATCGTAG GTACTGGTCT GGAAGGAAAG GCTGCACGCG ACTCCCGTCT GCAGATCACT
TCTGAAGGTA AAGGTGTGGT TGAATTCGTG GATGCAAACG AAATTCATGT TCGTTACGAG
CGTGATGAAA TGCAGAAACT GGTTTCCTTT GAGGATGACC TGAAAATATA CCAGCTGACC
AAATTCGTTA AAACCAACCA GAGCACCTGT ATCAACCTGC GTCCAGCAGT GAAGAAAGGG
CAGCAGCTCG TGTTTGGCGA CTTCCTGACA GAAGGTTACG CTACACGTGG TGGTGAATTG
GCACTGGGTC GTAACATGAA AGTGGCGTTC ATGCCATGGA AAGGTTACAA CTTCGAGGAT
GCGATCGTAA TCTCTGAGCG TGTAGGACGT GAAGACCTCT TCACCTCTAT CCACATCGAT
GAATACGAAC TGGAAGTACG TGATACTAAA CTGGGTGAAG AAGAACTGAC ACCAGATATT
CCAAACGTAA GTGAGGAAGC AACGAAAGAT CTGGATCAGA ACGGTATCAT CCGTGTTGGT
GCACACATCA AAGAAGGTGA CATCCTGATC GGTAAGATCA CTCCTCGTGG TGAATCTGAT
CCTTCTCCTG AAGAAAAACT GCTCCGTGCG ATCTTCGGTG ACAAGGCTTC TGATGCGAAA
GATGCATCCC TGAAGGCACC TCCAAGCACA GAAGGTGTGG TAATCGACAA GAAATTGTTC
AGCCGCGCTA AGAAAGATAA AAACTCTAAG ACCCGTGAAA AAGCGGCGCT GGAGAAACTG
GAAAAAGTAC ACCAGAAGAA TGAAGAAGAC CTGCTGGAAG TACTCATGGG TAAATTGCTG
ACACTCCTGA AGGATAAAAC TTCTCAGGGT ATCACCAACA CTTACGGTGA AGTACTGATC
TCCAAAGGAT CTAAATTCTC TTCCAAGAAC CTGGCGAACA TCGACTTCCA GAACGTGAAT
CCGCTCGGCT GGACTACCGA CGAGGTAACC AACGATCAGA TCAACACACT GTTGCACAAC
TACAACATCA AGTACAATGA AGAACTCGGA CGTTACAAAC GTGAGAAGTT CAACATCTCA
ATTGGTGATG AGTTACCAGC TGGCGTACTG AAACTGGCTA AGGTTTACCT GGCTAGCAAA
CGTAAGCTGA AAGTGGGTGA TAAGATGGCG GGTCGTCACG GTAACAAGGG TATCGTTGCG
AAGATCGTTC GTGATGAAGA TATGCCATTC CTGGAAGACG GTACACCGGT AGATATCGTA
CTGAACCCAT TGGGCGTACC TTCCCGTATG AACCTTGGTC AGATTTACGA AACTGTACTG
GGTTGGGCTG GTCTGAAACT GGGTGTAAGA TTTGCGACAC CTATCTTCGA CGGTGCTACT
ACTGAAGAAA TAGCTGAATA TATCGACGAA GCTGGTTTAC CAAGCTTTGG CCATACTTAT
CTGTATGATG GCGAAACCGG TGAGCGTTTC CACCAGAAAG CTACCGTGGG TGTTATCTAC
ATGCTGAAAC TGAGCCACAT GGTTGATGAC AAAATGCACG CCCGTTCTAT CGGACCGTAC
AGTCTCATTA CACAACAGCC GTTGGGTGGT AAGGCGCAGT TCGGTGGTCA GCGTTTTGGT
GAGATGGAGG TGTGGGCACT GGAAGCATAT GGTGCATCCA ATATCCTGCA GGAACTGTTA
ACCATTAAGT CTGATGACAT TGTAGGCCGT GCCAAAGCAT ATGAGTCTAT CGTTAAAGGC
GATAACATAC CAAAAGCAGG CGTACCGGAG TCCTTCAATG TATTGATACA TGAACTTCGC
GGTCTGGGTC TGGATTTGAA ATTTGATTAA
|
|---|
| Protein sequence | MSLKKAQANE RVNFGKIKQV TETPDLLAIQ IQSFKDFFQL ETTPDKRNNE GLFKVFKENF
PITDTRNIFN LEFLDYFVDP PRYTIEECIE RGLTYSVPLK AKLRLSCNDE EHVDFQTIVQ
DVFLGNIPYM TPRGTFVING AERVVVSQLH RSPGVFFGQS IHPNGTKIYS ARVIPFKGAW
MEFATDINNV MYAYIDRKKK FPVTTLLRAI GYETDKDILQ LFGMADEVKA DKKSLEKYAG
KKLGARVLRS WVEDFVDEDT GEVVSIERNE IMLERDSILD EANIETIVDM GVKSVFVQKE
EVSGDFSIIY NTLNKDTSNS ELEAVQHIYR QLRGADAPDD ETARGIIDKL FFSDKRYDLG
DVGRYKINRK LGLPTPLNMK VLTKEDIIAI IKYLVQLTNS KAEIDDIDHL SNRRVRTVGE
QLYAQFGVGL ARMARTIRER MNVRDNEVFT PVDLINARTL SSVINSFFGT SQLSQFLDQT
NPLSEITHKR RISALGPGGL SRERAGFEVR DVHYSHYGRL CTIETPEGPN IGLISTLCVH
AKVNDMGFIE TPYRKVNEGK VDMDNVRFLS AEEEDSVKIA QANAPLDEEG HFVNDKVKSR
ETGDFPILDR EEVEYMDVAP NQIVGLSASL IPFLEHDDAN RALMGSNMQR QAVPLINPQV
PIVGTGLEGK AARDSRLQIT SEGKGVVEFV DANEIHVRYE RDEMQKLVSF EDDLKIYQLT
KFVKTNQSTC INLRPAVKKG QQLVFGDFLT EGYATRGGEL ALGRNMKVAF MPWKGYNFED
AIVISERVGR EDLFTSIHID EYELEVRDTK LGEEELTPDI PNVSEEATKD LDQNGIIRVG
AHIKEGDILI GKITPRGESD PSPEEKLLRA IFGDKASDAK DASLKAPPST EGVVIDKKLF
SRAKKDKNSK TREKAALEKL EKVHQKNEED LLEVLMGKLL TLLKDKTSQG ITNTYGEVLI
SKGSKFSSKN LANIDFQNVN PLGWTTDEVT NDQINTLLHN YNIKYNEELG RYKREKFNIS
IGDELPAGVL KLAKVYLASK RKLKVGDKMA GRHGNKGIVA KIVRDEDMPF LEDGTPVDIV
LNPLGVPSRM NLGQIYETVL GWAGLKLGVR FATPIFDGAT TEEIAEYIDE AGLPSFGHTY
LYDGETGERF HQKATVGVIY MLKLSHMVDD KMHARSIGPY SLITQQPLGG KAQFGGQRFG
EMEVWALEAY GASNILQELL TIKSDDIVGR AKAYESIVKG DNIPKAGVPE SFNVLIHELR
GLGLDLKFD
|
|---|
| |