| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1707 |
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| Symbol | rplA |
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| ID | 8357856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 2049125 |
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| End bp | 2049814 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644963893 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_003121404 |
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| Protein GI | 256420751 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00384997 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAACTA AGAAAAGAAA AGCAGCCGAT ACAAAGGTGG ACAAAAACAA GGTTTACAGC
CTGAAAGAAG CTTCCGCACT TGTAAAAGAT ATTAACTGCA CCAAATTCGA CAGTTCTGTC
GATATTCATA TCCGTCTGGG CGTTGATCCC AAGAAAGCAG ACCAGGCTAT CCGTGGTTCC
GTAACGCTTC CCCACGGTAC TGGTAAAACT AAACGTGTAC TGGTTCTTTG CACTCCTGAT
AAAGAAGCTG CTGCAAAAGA GGCTGGTGCT GATCATGTTG GTCTGGACGA GTTTATCCAG
AAAATCGAAG CTGGTTGGAC TGATATCGAC GTTATCGTAG CTACGCCTGC TGTAATGCCG
AAGATCGGTA AACTGGGTAA GATCCTGGGG CCTCGTAACC TGATGCCTAA CCCTAAAACA
GGTACTGTTA CTAATGATGT AGCGGCAGCT GTTAATGAGG TTAAAGGTGG TAAAATCACC
TTTAAAGTGG ATAAGGCAGG TATCATTCAC GCTTCTATTG GTCGCGTTTC TTTCGCTTCT
GATAAACTTG AGCAGAACTC CCAGGAGCTG ATCAACGCTA TCATCAAGCT GAAACCAGCT
ACAGCGAAAG GTACTTACCT GAAAGGACTG TCAATGGCGA GCACAATGAG CCCGAGCATT
ACAGTTGACA CAAAATCAGT TCAAAACTAA
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| Protein sequence | MATKKRKAAD TKVDKNKVYS LKEASALVKD INCTKFDSSV DIHIRLGVDP KKADQAIRGS
VTLPHGTGKT KRVLVLCTPD KEAAAKEAGA DHVGLDEFIQ KIEAGWTDID VIVATPAVMP
KIGKLGKILG PRNLMPNPKT GTVTNDVAAA VNEVKGGKIT FKVDKAGIIH ASIGRVSFAS
DKLEQNSQEL INAIIKLKPA TAKGTYLKGL SMASTMSPSI TVDTKSVQN
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