| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1642 |
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| Symbol | |
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| ID | 8357784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 1979220 |
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| End bp | 1980215 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644963822 |
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| Product | DNA-directed RNA polymerase, alpha subunit |
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| Protein accession | YP_003121339 |
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| Protein GI | 256420686 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.485379 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAATTC TGAATTTCCA AAAGCCTGAT AAGATCGTTT TGCAGAAGTC AACTGACTTT
GAAGCTCAAT TCGAATTCCG GCCGTTAGAA CCGGGTTACG GTGTGACTGT GGGTAATGCG
CTGCGTCGTG TGCTCCTGTC ATCTCTGGAG GGTTATGCCA TTGTGGGAAT AAAGATTGAA
GGTGCTGATC ATGAGTTTGC AACTTTAAAA GGGATCACTG AAGACGTAAC TGAAATCATC
CTGAATCTGA AACAGGTACG TTTCAAACGC ATCGTTGAGA ACGAAGTTAA CAACGAGAAA
ATTCAGATCT CTATTAAAGG TAAAACTGAG TTCCGTGCTG ACATGATCGA AAAAGCAACC
AGTGCTTTCC AGATCATGAA TCCTGAATTG CTTATCTGTA CGCTGGATCC ATCTGCAAAG
CTGGATATCG AATTAACTAT CGGTAAAGGC CGTGGTTATG TGCCAGCTGA AGAGAATAAA
CCTAAAGATG CCGTTTTCGG TTATATCGCG ATCGACTCTA TCTTTACGCC AATCAAAAAC
GTAAAGTATA GCATCGAGAA CACCCGTGTG GAACAAAAGA CTGACTATGA GAAACTGATC
ATGGAAGTGA TCACTGATGG TACAATCCAC CCGGAAGAAG CTGTAAAACA AGCCTCCCGT
ATACTGATTC AGCACCTGAT GATCATCACC GATGAAAACA TCAGCTTCGA TACTAAAGAT
ACCGAGAAGG AAGATGTGGT TGACGAACAG ACACTGCAGC TGCGTAAAAT CCTGAAAACG
CCGCTGGAAG ATCTGGATCT GAGCGTTCGT GCCTTCAACT GTCTGAAAGC AGCTAAGATT
AACTCCCTGA GCGAACTGGT ACAGTACGAG CAGGAAGAAC TGATGAAGTT CAGAAACTTC
GGTCAGAAAT CTCTCAGCGA AATCGAACAA GTACTGAACG AAAGAGGTTT ACATTTCGGT
ATGGATCTGT CCAAACTGAA ATTAGACGAA GAATAG
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| Protein sequence | MAILNFQKPD KIVLQKSTDF EAQFEFRPLE PGYGVTVGNA LRRVLLSSLE GYAIVGIKIE
GADHEFATLK GITEDVTEII LNLKQVRFKR IVENEVNNEK IQISIKGKTE FRADMIEKAT
SAFQIMNPEL LICTLDPSAK LDIELTIGKG RGYVPAEENK PKDAVFGYIA IDSIFTPIKN
VKYSIENTRV EQKTDYEKLI MEVITDGTIH PEEAVKQASR ILIQHLMIIT DENISFDTKD
TEKEDVVDEQ TLQLRKILKT PLEDLDLSVR AFNCLKAAKI NSLSELVQYE QEELMKFRNF
GQKSLSEIEQ VLNERGLHFG MDLSKLKLDE E
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